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Mutant Information |
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Mutant Name | FN-47 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-47 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 8
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr2 | 12719670 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 12786022 | T-A | Homo | INTERGENIC | |
SBS | Chr4 | 17297947 | C-A | Homo | INTRON | |
SBS | Chr5 | 15014735 | T-A | Homo | INTERGENIC | |
SBS | Chr6 | 1272072 | G-A | Homo | INTERGENIC | |
SBS | Chr6 | 10925516 | G-A | Homo | INTERGENIC | |
SBS | Chr7 | 25262941 | C-G | Homo | INTERGENIC | |
SBS | Chr8 | 6957105 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g11860 |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 3043166 | 3043168 | 2 | |
Deletion | Chr1 | 4409679 | 4409680 | 1 | |
Deletion | Chr8 | 4432657 | 4432664 | 7 | |
Deletion | Chr11 | 7050001 | 7173000 | 123000 | 15 |
Deletion | Chr11 | 7941857 | 7941859 | 2 | |
Deletion | Chr7 | 8663979 | 8663981 | 2 | |
Deletion | Chr4 | 13321860 | 13321872 | 12 | |
Deletion | Chr9 | 13363001 | 13646000 | 283000 | 49 |
Deletion | Chr9 | 13652001 | 13708000 | 56000 | 6 |
Deletion | Chr6 | 15289400 | 15289409 | 9 | LOC_Os06g26130 |
Deletion | Chr4 | 22375322 | 22377957 | 2635 | 2 |
Deletion | Chr1 | 23321514 | 23321521 | 7 | |
Deletion | Chr6 | 23360931 | 23360935 | 4 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 18134548 | 18134548 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 1734818 | 2164570 | LOC_Os08g03660 |
Inversion | Chr2 | 13916892 | 14118293 | LOC_Os02g24330 |
Inversion | Chr1 | 37398784 | 38022815 | LOC_Os01g65510 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 1048305 | Chr4 | 22375324 | LOC_Os04g37619 |
Translocation | Chr7 | 1048399 | Chr4 | 22377962 | LOC_Os04g37630 |
Translocation | Chr11 | 15066692 | Chr8 | 2164563 | LOC_Os11g26320 |