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Mutant Information

Mutant Name	FN-47 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-47 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 8

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	12719670	C-T	Homo	INTERGENIC
SBS	Chr3	12786022	T-A	Homo	INTERGENIC
SBS	Chr4	17297947	C-A	Homo	INTRON
SBS	Chr5	15014735	T-A	Homo	INTERGENIC
SBS	Chr6	10925516	G-A	Homo	INTERGENIC
SBS	Chr6	1272072	G-A	Homo	INTERGENIC
SBS	Chr7	25262941	C-G	Homo	INTERGENIC
SBS	Chr8	6957105	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g11860

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3043166	3043168	2
Deletion	Chr1	4409679	4409680	1
Deletion	Chr8	4432657	4432664	7
Deletion	Chr11	7050001	7173000	123000	15
Deletion	Chr11	7941857	7941859	2
Deletion	Chr7	8663979	8663981	2
Deletion	Chr4	13321860	13321872	12
Deletion	Chr9	13363001	13646000	283000	49
Deletion	Chr9	13652001	13708000	56000	6
Deletion	Chr6	15289400	15289409	9	LOC_Os06g26130
Deletion	Chr4	22375322	22377957	2635	2
Deletion	Chr1	23321514	23321521	7
Deletion	Chr6	23360931	23360935	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	18134548	18134548	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1734818	2164570	LOC_Os08g03660
Inversion	Chr2	13916892	14118293	LOC_Os02g24330
Inversion	Chr1	37398784	38022815	LOC_Os01g65510

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1048305	Chr4	22375324	LOC_Os04g37619
Translocation	Chr7	1048399	Chr4	22377962	LOC_Os04g37630
Translocation	Chr11	15066692	Chr8	2164563	LOC_Os11g26320