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Mutant Information

Variant Information

Single base substitutions: 11

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr3	11970613	T-C	Homo	INTERGENIC
SBS	Chr3	15099624	C-T	Homo	INTERGENIC
SBS	Chr3	15558654	C-T	Homo	INTERGENIC
SBS	Chr4	31457990	G-A	Homo	INTERGENIC
SBS	Chr5	3657891	A-T	Homo	INTRON
SBS	Chr9	1185694	C-T	Homo	INTERGENIC
SBS	Chr10	13916980	T-A	Homo	INTRON
SBS	Chr10	13916981	G-A	Homo	INTRON
SBS	Chr11	5553195	T-C	Homo	INTRON
SBS	Chr11	10296594	A-T	Homo	INTRON
SBS	Chr12	21767168	G-A	Homo	SYNONYMOUS_CODING

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1027364	1027365	1
Deletion	Chr2	3572342	3572346	4
Deletion	Chr2	4736727	4736738	11
Deletion	Chr3	9777097	9777098	1
Deletion	Chr8	10396288	10396315	27
Deletion	Chr5	11442812	11442819	7
Deletion	Chr10	11929931	11929956	25
Deletion	Chr2	12773226	12773227	1
Deletion	Chr6	13075001	13089000	14000	3
Deletion	Chr8	15428614	15428617	3
Deletion	Chr1	16743881	16743941	60
Deletion	Chr6	17667494	17667495	1
Deletion	Chr1	18131539	18131599	60
Deletion	Chr10	20152270	20152271	1
Deletion	Chr4	20830968	20830970	2
Deletion	Chr6	23005434	23021582	16148	4
Deletion	Chr2	29700174	29700175	1
Deletion	Chr3	35491752	35492198	446
Deletion	Chr1	39666569	39666570	1

Insertions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	514165	514171	7
Insertion	Chr7	4714237	4714260	24
Insertion	Chr8	16481451	16481462	12
Insertion	Chr11	28794547	28794554	8	LOC_Os11g47730
Insertion	Chr1	38507570	38507575	6
Insertion	Chr6	21372446	21372451	6	LOC_Os06g36390
Insertion	Chr8	23644560	23644565	6
Insertion	Chr8	26353245	26353250	6
Insertion	Chr1	6704332	6704335	4
Insertion	Chr1	7065368	7065371	4
Insertion	Chr5	17289595	17289598	4
Insertion	Chr6	28300445	28300448	4
Insertion	Chr8	5657557	5657560	4
Insertion	Chr1	23864604	23864606	3
Insertion	Chr3	8163030	8163032	3
Insertion	Chr3	25745703	25745705	3
Insertion	Chr1	14630857	14630858	2
Insertion	Chr11	871553	871554	2
Insertion	Chr11	3710388	3710389	2
Insertion	Chr12	6624869	6624870	2
Insertion	Chr12	9921929	9921930	2
Insertion	Chr3	34279135	34279136	2
Insertion	Chr4	4167580	4167581	2
Insertion	Chr4	10455647	10455648	2
Insertion	Chr4	17014022	17014023	2
Insertion	Chr5	8609638	8609639	2	LOC_Os05g15160
Insertion	Chr6	22683835	22683836	2
Insertion	Chr7	12851170	12851171	2
Insertion	Chr8	10131544	10131545	2
Insertion	Chr8	20070781	20070782	2
Insertion	Chr9	9495466	9495467	2
Insertion	Chr3	3173480	3173480	1
Insertion	Chr5	8861927	8861927	1
Insertion	Chr6	1510226	1510226	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9674276	11251787	LOC_Os08g18850
Inversion	Chr6	12295810	13075085	2
Inversion	Chr6	12295827	12962127	LOC_Os06g21260

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3145634	Chr3	27960058	LOC_Os09g06634
Translocation	Chr9	3147198	Chr8	10643124	LOC_Os09g06634
Translocation	Chr8	10643649	Chr3	27960043
Translocation	Chr3	35491761	Chr1	36588092	LOC_Os01g63150

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