Search Results
| Mutant Information |
|---|
| Mutant Name | FN-49 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-49 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 1
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr8 | 19481906 | C-A | Homo | INTERGENIC |
Deletions: 39
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1185060 | 1185061 | 1 | LOC_Os07g03110 |
| Deletion | Chr11 | 2246395 | 2246404 | 9 | LOC_Os11g05120 |
| Deletion | Chr4 | 2942879 | 2942882 | 3 | |
| Deletion | Chr5 | 3295322 | 3295340 | 18 | LOC_Os05g06430 |
| Deletion | Chr12 | 3531122 | 3531147 | 25 | |
| Deletion | Chr12 | 4357987 | 4358000 | 13 | |
| Deletion | Chr7 | 4431030 | 4431034 | 4 | |
| Deletion | Chr12 | 4784519 | 4784521 | 2 | |
| Deletion | Chr3 | 4837319 | 4841291 | 3972 | 2 |
| Deletion | Chr4 | 5413627 | 5413633 | 6 | |
| Deletion | Chr7 | 5444186 | 5444194 | 8 | |
| Deletion | Chr1 | 5673132 | 5673139 | 7 | |
| Deletion | Chr7 | 6422857 | 6422863 | 6 | |
| Deletion | Chr10 | 7375930 | 7375948 | 18 | |
| Deletion | Chr2 | 9964989 | 9965010 | 21 | |
| Deletion | Chr5 | 10860525 | 10860539 | 14 | |
| Deletion | Chr9 | 11005467 | 11005471 | 4 | |
| Deletion | Chr11 | 11106726 | 11106752 | 26 | |
| Deletion | Chr10 | 11441001 | 11450000 | 9000 | LOC_Os10g22160 |
| Deletion | Chr2 | 11633996 | 11634005 | 9 | |
| Deletion | Chr11 | 13146749 | 13146762 | 13 | |
| Deletion | Chr3 | 14568061 | 14568063 | 2 | |
| Deletion | Chr11 | 14605104 | 14605105 | 1 | |
| Deletion | Chr7 | 16372018 | 16372019 | 1 | LOC_Os07g28070 |
| Deletion | Chr2 | 17810127 | 17810130 | 3 | LOC_Os02g29970 |
| Deletion | Chr2 | 20527882 | 20528645 | 763 | |
| Deletion | Chr2 | 20672560 | 20672569 | 9 | |
| Deletion | Chr9 | 20792417 | 20792421 | 4 | |
| Deletion | Chr3 | 21526060 | 21526062 | 2 | LOC_Os03g38764 |
| Deletion | Chr1 | 22038122 | 22038134 | 12 | |
| Deletion | Chr1 | 22242664 | 22242668 | 4 | |
| Deletion | Chr12 | 22765149 | 22765160 | 11 | |
| Deletion | Chr8 | 24632774 | 24632781 | 7 | |
| Deletion | Chr3 | 25262404 | 25262421 | 17 | |
| Deletion | Chr2 | 25574057 | 25574071 | 14 | |
| Deletion | Chr12 | 26860618 | 26860619 | 1 | LOC_Os12g43270 |
| Deletion | Chr3 | 26955823 | 26955847 | 24 | |
| Deletion | Chr2 | 30922203 | 30922211 | 8 | LOC_Os02g50620 |
| Deletion | Chr3 | 34823179 | 34823370 | 191 | LOC_Os03g61340 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 14706376 | 14729276 | LOC_Os11g25780 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 15875304 | Chr4 | 31810028 | 2 |
| Translocation | Chr7 | 19278973 | Chr2 | 20527884 | LOC_Os07g32412 |
| Translocation | Chr4 | 31810027 | Chr3 | 12205381 | 2 |