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Mutant Information

Mutant Name	FN-5 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-5 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 13

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	12577755	C-T	Homo	INTRON
SBS	Chr2	12881435	C-T	Homo	INTERGENIC
SBS	Chr4	5462444	T-A	Homo	INTERGENIC
SBS	Chr4	5462445	C-A	Homo	INTERGENIC
SBS	Chr4	13054145	G-A	Homo	INTRON
SBS	Chr5	12284337	C-G	Homo	INTERGENIC
SBS	Chr5	14136993	A-G	Homo	INTERGENIC
SBS	Chr5	15260833	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g26230
SBS	Chr5	29385734	C-A	Homo	INTERGENIC
SBS	Chr6	1158031	T-A	Homo	INTERGENIC
SBS	Chr6	1158035	G-T	Homo	INTERGENIC
SBS	Chr10	18043159	A-G	Homo	INTERGENIC
SBS	Chr11	5844442	A-T	Homo	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2128001	2188000	60000	11
Deletion	Chr12	8170255	8170276	21
Deletion	Chr8	9561154	9561156	2
Deletion	Chr11	13445945	13445953	8	LOC_Os11g23770
Deletion	Chr1	17170902	17170906	4
Deletion	Chr6	17927138	17927151	13	LOC_Os06g30870
Deletion	Chr1	19506423	19506425	2
Deletion	Chr7	19831032	19831772	740	LOC_Os07g33200
Deletion	Chr8	20068454	20068675	221	LOC_Os08g32400
Deletion	Chr1	21106430	21106463	33
Deletion	Chr10	21954120	21954126	6	LOC_Os10g40824
Deletion	Chr7	22831486	23186489	355003	53
Deletion	Chr8	22832927	22832965	38
Deletion	Chr11	25265618	25316828	51210	5
Deletion	Chr6	26828102	26828104	2
Deletion	Chr1	42102366	42102370	4

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	19293462	19293463	2
Insertion	Chr5	6720481	6720481	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2127988	2959172
Inversion	Chr8	2187786	2499443

No Translocation