Search Results
| Mutant Information |
|---|
| Mutant Name | FN-51 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-51 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15945349 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 480339 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 3658187 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 3658188 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 3658189 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 35619412 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 27655204 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g48490 |
| SBS | Chr4 | 5291051 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 25493757 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 25685738 | T-A | HET | INTRON | |
| SBS | Chr5 | 22347072 | C-T | HOMO | INTRON | |
| SBS | Chr6 | 28984734 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 18942018 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 26614125 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g42120 |
| SBS | Chr9 | 14372674 | C-T | HET | INTRON | |
| SBS | Chr10 | 6713956 | G-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 12776476 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 8865337 | C-T | HOMO | INTRON | |
| SBS | Chr11 | 8955488 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 23206768 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 13374163 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 17301324 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 30432103 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 480339 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 3658187 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3658188 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3658189 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 35619412 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 27655204 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g48490 |
| SBS | Chr4 | 5291051 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22347072 | C-T | Homo | INTRON | |
| SBS | Chr6 | 28984734 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18942018 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 6713956 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 8865337 | C-T | Homo | INTRON | |
| SBS | Chr11 | 8955488 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17301324 | A-G | Homo | INTERGENIC |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2045962 | 2045963 | 1 | |
| Deletion | Chr12 | 5167419 | 5167424 | 5 | |
| Deletion | Chr9 | 6193023 | 6193031 | 8 | |
| Deletion | Chr4 | 6319785 | 6319793 | 8 | |
| Deletion | Chr11 | 9141539 | 9141546 | 7 | |
| Deletion | Chr11 | 10780564 | 10780566 | 2 | |
| Deletion | Chr11 | 21967034 | 21967060 | 26 | |
| Deletion | Chr6 | 22262829 | 22262830 | 1 | |
| Deletion | Chr6 | 30073269 | 30073304 | 35 | LOC_Os06g49700 |
| Deletion | Chr6 | 31085287 | 31085288 | 1 | LOC_Os06g51330 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 7246560 | 7249028 | LOC_Os08g12300 |
No Translocation