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Mutant Information

Mutant Name	FN-54 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-54 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5363839	G-A	HET	INTERGENIC
SBS	Chr1	6988295	C-T	HET	INTRON
SBS	Chr10	15829418	T-C	HET	INTERGENIC
SBS	Chr11	24678872	A-T	HET	INTERGENIC
SBS	Chr11	8407239	A-G	HOMO	INTERGENIC
SBS	Chr12	22289773	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g36420
SBS	Chr3	13453571	C-T	HET	INTRON
SBS	Chr3	24116928	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43250
SBS	Chr3	7115291	T-G	HET	INTERGENIC
SBS	Chr4	17070485	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	30611281	G-A	HET	INTERGENIC
SBS	Chr4	5100811	A-T	HET	INTERGENIC
SBS	Chr4	6148617	C-T	HOMO	INTERGENIC
SBS	Chr5	28602376	G-T	HOMO	INTRON
SBS	Chr5	8624488	G-A	HOMO	INTERGENIC
SBS	Chr6	28052507	G-A	HOMO	INTRON
SBS	Chr8	5912367	T-C	HET	SYNONYMOUS_CODING
SBS	Chr9	4237917	C-T	HOMO	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1718477	1718479	2
Deletion	Chr12	8356118	8356119	1
Deletion	Chr6	10695611	10696952	1341
Deletion	Chr2	12332722	12332723	1
Deletion	Chr4	16905001	16948000	43000	7
Deletion	Chr5	18597945	18597949	4	LOC_Os05g31930
Deletion	Chr2	20047888	20047898	10
Deletion	Chr8	20374001	20422000	48000	6
Deletion	Chr11	20646001	20714000	68000	11
Deletion	Chr11	21487001	21847000	360000	53
Deletion	Chr6	21778520	21778523	3
Deletion	Chr3	26773223	26773224	1
Deletion	Chr1	28097604	28097605	1	LOC_Os01g48960
Deletion	Chr1	28678492	28678493	1
Deletion	Chr4	30631386	30631387	1
Deletion	Chr1	32246852	32246854	2
Deletion	Chr1	32851321	32851322	1
Deletion	Chr1	38719693	38719694	1
Deletion	Chr1	39197105	39197112	7

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	27520285	27520285	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20770730	21486924	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2809834	Chr3	32146904
Translocation	Chr8	20421845	Chr5	15225153	LOC_Os05g26170
Translocation	Chr11	20673218	Chr4	28038605	LOC_Os11g35274
Translocation	Chr11	20674353	Chr4	28038595	LOC_Os11g35274