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Mutant Information |
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Mutant Name | FN-54 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-54 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 18
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 5363839 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 6988295 | C-T | HET | INTRON | |
SBS | Chr3 | 7115291 | T-G | HET | INTERGENIC | |
SBS | Chr3 | 13453571 | C-T | HET | INTRON | |
SBS | Chr3 | 24116928 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g43250 |
SBS | Chr4 | 5100811 | A-T | HET | INTERGENIC | |
SBS | Chr4 | 6148617 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 17070485 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 30611281 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 8624488 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 28602376 | G-T | HOMO | INTRON | |
SBS | Chr6 | 28052507 | G-A | HOMO | INTRON | |
SBS | Chr8 | 5912367 | T-C | HET | SYNONYMOUS_CODING | |
SBS | Chr9 | 4237917 | C-T | HOMO | INTRON | |
SBS | Chr10 | 15829418 | T-C | HET | INTERGENIC | |
SBS | Chr11 | 8407239 | A-G | HOMO | INTERGENIC | |
SBS | Chr11 | 24678872 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 22289773 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g36420 |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 1718477 | 1718479 | 2 | |
Deletion | Chr12 | 8356118 | 8356119 | 1 | |
Deletion | Chr6 | 10695611 | 10696952 | 1341 | |
Deletion | Chr2 | 12332722 | 12332723 | 1 | |
Deletion | Chr4 | 16905001 | 16948000 | 43000 | 7 |
Deletion | Chr5 | 18597945 | 18597949 | 4 | LOC_Os05g31930 |
Deletion | Chr2 | 20047888 | 20047898 | 10 | |
Deletion | Chr8 | 20374001 | 20422000 | 48000 | 6 |
Deletion | Chr11 | 20646001 | 20714000 | 68000 | 11 |
Deletion | Chr11 | 21487001 | 21847000 | 360000 | 53 |
Deletion | Chr6 | 21778520 | 21778523 | 3 | |
Deletion | Chr3 | 26773223 | 26773224 | 1 | |
Deletion | Chr1 | 28097604 | 28097605 | 1 | LOC_Os01g48960 |
Deletion | Chr1 | 28678492 | 28678493 | 1 | |
Deletion | Chr4 | 30631386 | 30631387 | 1 | |
Deletion | Chr1 | 32246852 | 32246854 | 2 | |
Deletion | Chr1 | 32851321 | 32851322 | 1 | |
Deletion | Chr1 | 38719693 | 38719694 | 1 | |
Deletion | Chr1 | 39197105 | 39197112 | 7 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 27520285 | 27520285 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr11 | 20770730 | 21486924 | 2 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 2809834 | Chr3 | 32146904 | |
Translocation | Chr8 | 20421845 | Chr5 | 15225153 | LOC_Os05g26170 |
Translocation | Chr11 | 20673218 | Chr4 | 28038605 | LOC_Os11g35274 |
Translocation | Chr11 | 20674353 | Chr4 | 28038595 | LOC_Os11g35274 |