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| Mutant Information |
|---|
| Mutant Name | FN-55 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-55 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27539906 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 21378162 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 12037960 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 35403924 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 16371168 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 33127137 | C-A | HET | INTERGENIC | |
| SBS | Chr4 | 34472570 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 19445039 | A-C | HET | INTERGENIC | |
| SBS | Chr5 | 26716105 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 63209 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g01030 |
| SBS | Chr5 | 63211 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g01030 |
| SBS | Chr5 | 6519464 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 12318935 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g21330 |
| SBS | Chr7 | 18984209 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 26339412 | T-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 10522794 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 10543168 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g17210 |
| SBS | Chr8 | 16102072 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 14594674 | G-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 18251466 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 20544979 | G-C | HOMO | INTRON | |
| SBS | Chr9 | 4897428 | G-A | HET | INTERGENIC |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 70222 | 70258 | 36 | |
| Deletion | Chr8 | 805964 | 805974 | 10 | |
| Deletion | Chr2 | 2155106 | 2155107 | 1 | |
| Deletion | Chr5 | 6822782 | 6822789 | 7 | |
| Deletion | Chr7 | 8446813 | 8446820 | 7 | |
| Deletion | Chr12 | 8631103 | 8631113 | 10 | |
| Deletion | Chr8 | 9503977 | 9503982 | 5 | |
| Deletion | Chr12 | 9860580 | 9860581 | 1 | |
| Deletion | Chr6 | 13337924 | 13337937 | 13 | |
| Deletion | Chr7 | 22328630 | 22328638 | 8 | |
| Deletion | Chr8 | 25728699 | 25728708 | 9 | LOC_Os08g40640 |
| Deletion | Chr1 | 26003564 | 26033559 | 29995 | 6 |
| Deletion | Chr7 | 29553172 | 29553178 | 6 | LOC_Os07g49340 |
No Insertion
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 4004071 | 4587328 | |
| Inversion | Chr10 | 4004086 | 4587341 | |
| Inversion | Chr12 | 20977444 | 21048984 | LOC_Os12g34670 |
| Inversion | Chr1 | 26913651 | 26940381 | LOC_Os01g47100 |
No Translocation