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| Mutant Information |
|---|
| Mutant Name | FN-56 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-56 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8930690 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 19011758 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g35550 |
| SBS | Chr11 | 1761254 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 21209623 | C-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 7187790 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g12970 |
| SBS | Chr4 | 17258547 | T-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 4137907 | T-A | HET | INTRON | |
| SBS | Chr5 | 9684861 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 9684862 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 11997641 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 16104569 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 10096262 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 12918380 | A-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 23532672 | C-G | HET | INTERGENIC | |
| SBS | Chr8 | 25321132 | T-G | HET | INTERGENIC | |
| SBS | Chr8 | 25321133 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 25322829 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g39970 |
| SBS | Chr9 | 19617827 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g32910 |
| SBS | Chr9 | 4291148 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr9 | 6839860 | C-G | HOMO | INTRON | |
| SBS | Chr9 | 7107858 | T-A | HOMO | SYNONYMOUS_CODING |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 4439129 | 4439139 | 10 | |
| Deletion | Chr12 | 5686424 | 5686428 | 4 | LOC_Os12g10640 |
| Deletion | Chr9 | 6710900 | 6710910 | 10 | |
| Deletion | Chr4 | 7515915 | 7516127 | 212 | |
| Deletion | Chr2 | 8975184 | 8975185 | 1 | |
| Deletion | Chr7 | 16309996 | 16310016 | 20 | |
| Deletion | Chr5 | 17564862 | 17564863 | 1 | |
| Deletion | Chr1 | 18332944 | 18332949 | 5 | LOC_Os01g33260 |
| Deletion | Chr5 | 20549285 | 20549291 | 6 | LOC_Os05g34650 |
| Deletion | Chr4 | 22222251 | 22222260 | 9 | |
| Deletion | Chr2 | 22855130 | 22855140 | 10 | |
| Deletion | Chr4 | 23841936 | 23841939 | 3 | |
| Deletion | Chr3 | 25006927 | 25006954 | 27 | LOC_Os03g44440 |
| Deletion | Chr8 | 25311274 | 25311283 | 9 | LOC_Os08g39940 |
| Deletion | Chr3 | 26348285 | 26348299 | 14 | |
| Deletion | Chr3 | 27415290 | 27415292 | 2 | |
| Deletion | Chr7 | 27482388 | 27482394 | 6 | |
| Deletion | Chr3 | 31963238 | 31963239 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 22190459 | 22190463 | 5 | LOC_Os10g41290 |
| Insertion | Chr3 | 16033737 | 16033738 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 23121483 | 25407724 | |
| Inversion | Chr1 | 23342607 | 25407743 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 7184589 | Chr1 | 5600763 | 2 |
| Translocation | Chr12 | 7185242 | Chr1 | 5600772 | 2 |