Search Results
| Mutant Information |
|---|
| Mutant Name | FN-59 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-59 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2248040 | T-C | HET | INTRON | |
| SBS | Chr1 | 2248527 | T-A | HET | INTRON | |
| SBS | Chr1 | 10026306 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr1 | 21565411 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 29954040 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 38675962 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 39728929 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 39728930 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 7445903 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 14502302 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 16032612 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 26293214 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 20156906 | A-C | HET | INTERGENIC | |
| SBS | Chr5 | 28910157 | T-A | HET | INTRON | |
| SBS | Chr6 | 12683481 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 14808884 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 5186089 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 15351954 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 12885522 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 1958013 | C-A | HOMO | INTRON | |
| SBS | Chr10 | 2153313 | T-A | HET | INTERGENIC | |
| SBS | Chr10 | 10222030 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 9302279 | C-G | HET | INTERGENIC | |
| SBS | Chr11 | 14379728 | C-A | HET | INTERGENIC | |
| SBS | Chr11 | 16916812 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 21889197 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 26133938 | A-C | HET | INTERGENIC | |
| SBS | Chr12 | 8168331 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 11299796 | T-G | HET | INTRON | |
| SBS | Chr12 | 11299797 | C-T | HET | INTRON |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 870116 | 870126 | 10 | |
| Deletion | Chr3 | 5493726 | 5493727 | 1 | |
| Deletion | Chr11 | 5670862 | 5670868 | 6 | |
| Deletion | Chr9 | 5686575 | 5686585 | 10 | LOC_Os09g10390 |
| Deletion | Chr4 | 7504953 | 7504959 | 6 | |
| Deletion | Chr9 | 10162636 | 10162637 | 1 | |
| Deletion | Chr9 | 10242659 | 10242711 | 52 | |
| Deletion | Chr3 | 12367001 | 12399000 | 32000 | 6 |
| Deletion | Chr7 | 17502001 | 17538000 | 36000 | 5 |
| Deletion | Chr3 | 18131297 | 18131307 | 10 | LOC_Os03g31730 |
| Deletion | Chr5 | 20205256 | 20205257 | 1 | LOC_Os05g34170 |
| Deletion | Chr11 | 21913505 | 21913512 | 7 | LOC_Os11g37120 |
| Deletion | Chr4 | 26747131 | 26747140 | 9 | LOC_Os04g45270 |
| Deletion | Chr2 | 29298777 | 29298787 | 10 | |
| Deletion | Chr4 | 34001320 | 34001332 | 12 | LOC_Os04g57050 |
| Deletion | Chr4 | 34537383 | 34537390 | 7 | LOC_Os04g57980 |
| Deletion | Chr1 | 41310171 | 41310173 | 2 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 3585728 | 3585738 | 11 | |
| Insertion | Chr4 | 23881492 | 23881495 | 4 | |
| Insertion | Chr4 | 32945730 | 32945730 | 1 | |
| Insertion | Chr7 | 19981738 | 19981738 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 10831976 | 11049639 | LOC_Os04g19780 |
| Inversion | Chr3 | 12366656 | 13791012 | LOC_Os03g21664 |
| Inversion | Chr3 | 12399343 | 13791015 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 21765664 | Chr7 | 17543612 | |
| Translocation | Chr7 | 26239496 | Chr2 | 927299 | 2 |