Search Results
| Mutant Information |
|---|
| Mutant Name | FN-61 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-61 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11171882 | A-G | HET | INTRON | |
| SBS | Chr1 | 17028440 | G-T | HET | INTRON | |
| SBS | Chr1 | 21442377 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 32517022 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 42804009 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 159179 | T-A | HET | INTRON | |
| SBS | Chr3 | 9579451 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 16639114 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 28157755 | T-G | HET | INTRON | |
| SBS | Chr3 | 28252217 | T-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr3 | 34123219 | A-T | HET | INTERGENIC | |
| SBS | Chr3 | 34123883 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g59990 |
| SBS | Chr4 | 33080985 | C-T | HOMO | INTRON | |
| SBS | Chr5 | 2368620 | G-A | HET | INTRON | |
| SBS | Chr6 | 3014034 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 13443804 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 26992244 | C-T | HET | INTRON | |
| SBS | Chr6 | 27525095 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 11957713 | C-T | HOMO | INTRON | |
| SBS | Chr7 | 26451704 | C-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 1225834 | A-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 23910702 | A-T | HET | INTERGENIC | |
| SBS | Chr9 | 2992485 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g06360 |
| SBS | Chr9 | 3176460 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 10316842 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g16890 |
| SBS | Chr9 | 12941071 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g21420 |
| SBS | Chr9 | 22258392 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 23425290 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 24505854 | T-A | HOMO | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 405980 | 405981 | 1 | |
| Deletion | Chr2 | 4887673 | 4887692 | 19 | |
| Deletion | Chr6 | 5113607 | 5113610 | 3 | |
| Deletion | Chr9 | 7498001 | 7743000 | 245000 | 40 |
| Deletion | Chr10 | 8511090 | 8511095 | 5 | |
| Deletion | Chr10 | 12429099 | 12429100 | 1 | |
| Deletion | Chr8 | 16639606 | 16639613 | 7 | |
| Deletion | Chr7 | 17905574 | 17905576 | 2 | |
| Deletion | Chr8 | 21391546 | 21391547 | 1 | |
| Deletion | Chr6 | 22811331 | 22811580 | 249 | LOC_Os06g38490 |
| Deletion | Chr6 | 24064070 | 24064079 | 9 | LOC_Os06g40410 |
| Deletion | Chr3 | 25124566 | 25124569 | 3 | |
| Deletion | Chr4 | 28646974 | 28646975 | 1 | |
| Deletion | Chr3 | 34955001 | 34971000 | 16000 | 4 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 27202452 | 27202452 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 12460664 | 12878749 | LOC_Os09g20684 |
| Inversion | Chr9 | 12460676 | 12878761 | LOC_Os09g20684 |
No Translocation