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| Mutant Information |
|---|
| Mutant Name | FN-63 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-63 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8621688 | G-C | HET | INTERGENIC | |
| SBS | Chr10 | 7140668 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 11642319 | G-A | HOMO | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr11 | 2831986 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 10518139 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 2256866 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g04880 |
| SBS | Chr2 | 24900127 | A-T | HOMO | INTRON | |
| SBS | Chr2 | 3720732 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 6238120 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 23123639 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 28043010 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 33662261 | T-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 23604588 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 29497748 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g49430 |
| SBS | Chr4 | 31862096 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g53496 |
| SBS | Chr4 | 9698839 | A-G | HOMO | INTRON | |
| SBS | Chr6 | 16478547 | C-T | HET | INTRON | |
| SBS | Chr6 | 4275191 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 17702545 | G-A | HET | INTRON | |
| SBS | Chr7 | 21634251 | T-C | HOMO | INTRON | |
| SBS | Chr7 | 22540400 | C-G | HET | INTRON | |
| SBS | Chr8 | 1795479 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 24536944 | A-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 6031419 | C-G | HOMO | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 3343941 | 3343942 | 1 | |
| Deletion | Chr1 | 6043042 | 6043052 | 10 | |
| Deletion | Chr2 | 6238321 | 6238326 | 5 | |
| Deletion | Chr8 | 6354740 | 6354741 | 1 | |
| Deletion | Chr1 | 6565270 | 6567367 | 2097 | LOC_Os01g12070 |
| Deletion | Chr10 | 8462984 | 8463017 | 33 | LOC_Os10g16930 |
| Deletion | Chr2 | 8971001 | 9126000 | 155000 | 20 |
| Deletion | Chr1 | 9626871 | 9626881 | 10 | |
| Deletion | Chr6 | 13329600 | 13350958 | 21358 | 3 |
| Deletion | Chr9 | 14582937 | 14582951 | 14 | |
| Deletion | Chr9 | 21097488 | 21097490 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 11887922 | 11887922 | 1 | |
| Insertion | Chr11 | 22142323 | 22142324 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 3516376 | 40291526 | |
| Inversion | Chr12 | 4410912 | 4448183 | LOC_Os12g08720 |
| Inversion | Chr12 | 4410929 | 4448189 | LOC_Os12g08720 |
| Inversion | Chr2 | 8777531 | 8936206 | LOC_Os02g15810 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3568834 | Chr2 | 7614334 | LOC_Os02g13960 |
| Translocation | Chr10 | 3569022 | Chr2 | 7615235 | LOC_Os02g13960 |
| Translocation | Chr2 | 7614333 | Chr1 | 6567362 | 2 |
| Translocation | Chr2 | 7615230 | Chr1 | 6565277 | 2 |
| Translocation | Chr4 | 30298178 | Chr1 | 40291560 | LOC_Os04g51172 |