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| Mutant Information |
|---|
| Mutant Name | FN-64 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-64 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 42879852 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g74030 |
| SBS | Chr10 | 14582652 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 14582653 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 23090223 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g42820 |
| SBS | Chr10 | 3176816 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 4090018 | T-C | HET | INTERGENIC | |
| SBS | Chr11 | 20050670 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 4191774 | G-A | HET | INTRON | |
| SBS | Chr11 | 9473082 | C-T | HET | INTRON | |
| SBS | Chr12 | 3491323 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 7943006 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 16147394 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 17054389 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 26050945 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 27051025 | A-G | HOMO | INTRON | |
| SBS | Chr2 | 27052677 | G-C | HOMO | INTRON | |
| SBS | Chr3 | 30698055 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 6552299 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 16195520 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 22253032 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 8569900 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 16449836 | A-T | HOMO | INTRON | |
| SBS | Chr6 | 5059846 | G-A | HET | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 784467 | 784888 | 421 | LOC_Os12g02390 |
| Deletion | Chr11 | 1438035 | 1438039 | 4 | |
| Deletion | Chr10 | 5784595 | 5784602 | 7 | |
| Deletion | Chr4 | 7206001 | 7251000 | 45000 | 9 |
| Deletion | Chr11 | 11045729 | 11045735 | 6 | |
| Deletion | Chr1 | 12056420 | 12056423 | 3 | |
| Deletion | Chr1 | 13370001 | 13466000 | 96000 | 15 |
| Deletion | Chr9 | 13420100 | 13420101 | 1 | |
| Deletion | Chr12 | 21711322 | 21711325 | 3 | LOC_Os12g35710 |
| Deletion | Chr4 | 27787650 | 27787658 | 8 | |
| Deletion | Chr4 | 35077862 | 35077867 | 5 |
No Insertion
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 7206128 | 7334811 | LOC_Os04g13240 |
| Inversion | Chr4 | 7250810 | 7334819 | 2 |
No Translocation