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| Mutant Information |
|---|
| Mutant Name | FN-65 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-65 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10126024 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 1356638 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 1805719 | A-G | HET | INTRON | |
| SBS | Chr12 | 25872222 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 26467600 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 858300 | A-T | HET | UTR_3_PRIME | |
| SBS | Chr2 | 6387653 | G-A | HET | INTRON | |
| SBS | Chr3 | 10229030 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 6626906 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 8689198 | T-A | HET | INTRON | |
| SBS | Chr4 | 17699660 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 26501712 | T-G | HOMO | INTRON | |
| SBS | Chr5 | 17002705 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 8425065 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 14221315 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 16336404 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 6660670 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 10741159 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g17550 |
| SBS | Chr8 | 16123950 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 23417908 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g37050 |
| SBS | Chr8 | 5843324 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g10070 |
| SBS | Chr9 | 2333739 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g04410 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 1131114 | 1131125 | 11 | LOC_Os12g03030 |
| Deletion | Chr8 | 2818351 | 2818352 | 1 | |
| Deletion | Chr10 | 4447028 | 4447039 | 11 | |
| Deletion | Chr8 | 5861462 | 5861471 | 9 | |
| Deletion | Chr9 | 6510499 | 6510500 | 1 | LOC_Os09g11670 |
| Deletion | Chr12 | 7460557 | 7462409 | 1852 | LOC_Os12g13360 |
| Deletion | Chr2 | 8016064 | 8016079 | 15 | |
| Deletion | Chr6 | 15797681 | 15797683 | 2 | |
| Deletion | Chr11 | 16006613 | 16006615 | 2 | LOC_Os11g27799 |
| Deletion | Chr12 | 16749066 | 16749072 | 6 | |
| Deletion | Chr7 | 19242404 | 19242405 | 1 | |
| Deletion | Chr6 | 21696254 | 21696255 | 1 | |
| Deletion | Chr3 | 24338242 | 24338243 | 1 | |
| Deletion | Chr1 | 26011914 | 26011923 | 9 | |
| Deletion | Chr3 | 27370391 | 27389530 | 19139 | 2 |
| Deletion | Chr3 | 32853404 | 32853405 | 1 | |
| Deletion | Chr3 | 36303250 | 36303251 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 26690815 | 26690817 | 3 | LOC_Os02g44130 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 3608576 | 3724362 | LOC_Os11g07200 |
No Translocation