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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	316779	A-G	HET	INTERGENIC
SBS	Chr1	9208525	G-A	HOMO	INTRON
SBS	Chr1	19930257	C-G	HET	INTRON
SBS	Chr1	29542577	G-A	HOMO	INTERGENIC
SBS	Chr1	31697854	C-T	HET	INTERGENIC
SBS	Chr1	40738394	G-C	HET	INTERGENIC
SBS	Chr2	6579241	T-C	HOMO	INTRON
SBS	Chr3	8532983	G-A	HET	UTR_5_PRIME
SBS	Chr3	20294139	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36600
SBS	Chr3	26791117	G-A	HET	INTRON
SBS	Chr4	13396748	C-T	HET	INTERGENIC
SBS	Chr4	14549015	A-G	HET	INTERGENIC
SBS	Chr4	15181914	A-C	HET	INTERGENIC
SBS	Chr4	22495325	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37840
SBS	Chr5	4617350	A-T	HET	INTERGENIC
SBS	Chr5	26142329	C-A	HOMO	INTERGENIC
SBS	Chr6	16208063	C-T	HET	INTERGENIC
SBS	Chr7	13843077	G-A	HOMO	INTERGENIC
SBS	Chr7	13843078	C-A	HOMO	INTERGENIC
SBS	Chr7	13843080	C-T	HOMO	INTERGENIC
SBS	Chr7	16159695	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g27700
SBS	Chr7	28820061	G-A	HET	INTERGENIC
SBS	Chr8	8570324	G-A	HET	INTERGENIC
SBS	Chr9	4107808	C-G	HET	INTERGENIC
SBS	Chr10	1831294	A-G	HET	INTERGENIC
SBS	Chr11	25815547	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42860
SBS	Chr11	28668945	G-A	HET	INTERGENIC
SBS	Chr12	9726778	G-A	HOMO	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	167012	167016	4	LOC_Os07g01270
Deletion	Chr10	1287409	1287410	1
Deletion	Chr9	5449864	5449870	6
Deletion	Chr1	6432554	6432555	1	LOC_Os01g11880
Deletion	Chr6	6665112	6665286	174
Deletion	Chr7	7599067	7599068	1
Deletion	Chr12	8261078	8261082	4
Deletion	Chr1	8892341	8892349	8	LOC_Os01g15780
Deletion	Chr9	9061870	9061892	22
Deletion	Chr6	11341183	11341189	6
Deletion	Chr10	11781235	11781238	3
Deletion	Chr5	12255257	12255265	8
Deletion	Chr12	12260885	12260918	33	LOC_Os12g21784
Deletion	Chr6	12358395	12358414	19
Deletion	Chr7	13759879	13759884	5
Deletion	Chr8	13777272	13777287	15	LOC_Os08g22910
Deletion	Chr8	15080572	15080577	5	LOC_Os08g24910
Deletion	Chr5	16044586	16044589	3
Deletion	Chr5	17030670	17030675	5
Deletion	Chr2	17867615	17867636	21
Deletion	Chr7	22823575	22823578	3
Deletion	Chr7	24614694	24614696	2
Deletion	Chr6	24862362	24862373	11
Deletion	Chr11	25690001	25725000	35000	7
Deletion	Chr6	26963884	26963886	2
Deletion	Chr8	28039786	28039795	9
Deletion	Chr1	29916023	29916037	14
Deletion	Chr3	32082643	32083150	507
Deletion	Chr4	34126070	34126074	4
Deletion	Chr1	36865646	36865648	2
Deletion	Chr1	37195522	37195531	9
Deletion	Chr1	37289687	37289711	24
Deletion	Chr1	42004687	42004690	3

Insertions: 37

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	32628879	32628880	2
Insertion	Chr1	23440791	23440808	18
Insertion	Chr5	29505252	29505262	11
Insertion	Chr11	5265068	5265077	10
Insertion	Chr8	15232949	15232957	9	LOC_Os08g25090
Insertion	Chr3	25979098	25979105	8
Insertion	Chr6	6630078	6630085	8
Insertion	Chr10	20219714	20219719	6
Insertion	Chr4	6741264	6741269	6
Insertion	Chr2	16410052	16410056	5
Insertion	Chr1	1551559	1551562	4
Insertion	Chr10	18899137	18899140	4
Insertion	Chr2	3171453	3171456	4
Insertion	Chr2	17009903	17009906	4
Insertion	Chr2	35638525	35638528	4
Insertion	Chr5	19252006	19252009	4
Insertion	Chr11	7192664	7192666	3
Insertion	Chr11	22994407	22994409	3
Insertion	Chr1	23593027	23593028	2
Insertion	Chr1	23798371	23798372	2
Insertion	Chr10	18741323	18741324	2	LOC_Os10g35110
Insertion	Chr12	9349145	9349146	2
Insertion	Chr12	19503149	19503150	2
Insertion	Chr2	10807208	10807209	2
Insertion	Chr2	16777344	16777345	2
Insertion	Chr2	18552323	18552324	2
Insertion	Chr3	8223600	8223601	2
Insertion	Chr7	9566513	9566514	2
Insertion	Chr7	29146364	29146365	2
Insertion	Chr8	24124414	24124415	2
Insertion	Chr9	19638827	19638828	2
Insertion	Chr1	31904143	31904143	1
Insertion	Chr6	28101511	28101511	1
Insertion	Chr6	28897523	28897523	1
Insertion	Chr7	11631373	11631373	1
Insertion	Chr7	12431164	12431164	1
Insertion	Chr8	14605235	14605235	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16371560	16592408	LOC_Os06g28750

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13316460	Chr2	16887434

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