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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	539250	A-C	HET	INTRON
SBS	Chr1	1638382	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	3964478	A-C	HET	INTERGENIC
SBS	Chr1	23532254	A-C	HOMO	INTRON
SBS	Chr1	24519409	G-A	HET	INTERGENIC
SBS	Chr1	32256052	C-T	HET	INTERGENIC
SBS	Chr1	40538050	C-T	HET	INTERGENIC
SBS	Chr2	14429601	C-T	HET	INTERGENIC
SBS	Chr2	17738569	G-T	HOMO	INTERGENIC
SBS	Chr3	12550076	T-A	HET	INTRON
SBS	Chr3	25802356	T-C	HET	INTRON
SBS	Chr4	28410166	T-C	HET	INTRON
SBS	Chr4	31776303	A-G	HOMO	INTERGENIC
SBS	Chr5	8876354	A-T	HET	INTERGENIC
SBS	Chr5	12919962	C-T	HET	INTERGENIC
SBS	Chr5	14944957	A-G	HET	INTERGENIC
SBS	Chr6	2230685	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05050
SBS	Chr6	2582811	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	456654	G-A	HOMO	INTRON
SBS	Chr7	9164338	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	5692404	C-T	HET	INTERGENIC
SBS	Chr8	24435829	C-A	HOMO	INTERGENIC
SBS	Chr8	26312058	T-C	HET	INTERGENIC
SBS	Chr10	316036	A-T	HET	INTERGENIC
SBS	Chr10	7060998	T-C	HOMO	INTRON
SBS	Chr10	9050846	T-A	HOMO	INTRON
SBS	Chr10	9246378	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g18200
SBS	Chr10	10419600	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	2045432	G-A	HOMO	INTERGENIC
SBS	Chr11	5539283	G-A	HET	INTERGENIC
SBS	Chr11	10629607	G-A	HET	INTERGENIC
SBS	Chr11	10629608	T-A	HET	INTERGENIC
SBS	Chr11	15739419	G-A	HOMO	INTERGENIC
SBS	Chr11	16667185	T-A	HET	INTERGENIC
SBS	Chr11	21044249	C-G	HOMO	INTERGENIC
SBS	Chr12	19916548	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g32980

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	206227	206231	4
Deletion	Chr3	213450	213469	19
Deletion	Chr1	2607622	2607630	8	LOC_Os01g05500
Deletion	Chr1	3459439	3459906	467	LOC_Os01g07330
Deletion	Chr9	5855588	5855589	1
Deletion	Chr7	9576193	9576194	1
Deletion	Chr1	10998687	10998690	3	LOC_Os01g19440
Deletion	Chr5	12315693	12315699	6
Deletion	Chr11	12613822	12613826	4
Deletion	Chr5	13336677	13336715	38
Deletion	Chr2	15358933	15358941	8
Deletion	Chr9	15931033	15931037	4
Deletion	Chr2	16065660	16065664	4
Deletion	Chr7	16389069	16389078	9
Deletion	Chr2	17030158	17030163	5	LOC_Os02g28780
Deletion	Chr1	17075118	17075126	8
Deletion	Chr11	17340079	17340081	2
Deletion	Chr11	18936449	18936455	6
Deletion	Chr1	19717196	19717241	45	LOC_Os01g35630
Deletion	Chr2	19844467	19844468	1
Deletion	Chr11	20132310	20132311	1
Deletion	Chr3	20173235	20173242	7
Deletion	Chr12	20173966	20173970	4	LOC_Os12g33360
Deletion	Chr1	20219001	20255000	36000	7
Deletion	Chr6	20600565	20600576	11
Deletion	Chr10	21403049	21403051	2
Deletion	Chr5	28086061	28086064	3
Deletion	Chr4	28494191	28494229	38	LOC_Os04g47912
Deletion	Chr6	30976144	30976182	38	LOC_Os06g51200
Deletion	Chr3	31650732	31650734	2
Deletion	Chr3	36006763	36006764	1	LOC_Os03g63770
Deletion	Chr1	42589702	42589704	2

Insertions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	14895818	14895818	1	LOC_Os03g25990
Insertion	Chr4	3115473	3115504	32
Insertion	Chr7	9981329	9981340	12
Insertion	Chr5	46752	46760	9
Insertion	Chr8	22331732	22331737	6
Insertion	Chr12	23521192	23521195	4	LOC_Os12g38320
Insertion	Chr2	4891348	4891351	4
Insertion	Chr3	10674720	10674723	4
Insertion	Chr3	25606280	25606283	4
Insertion	Chr7	27779155	27779158	4
Insertion	Chr8	16617982	16617985	4
Insertion	Chr12	26909980	26909982	3	LOC_Os12g43370
Insertion	Chr2	15314956	15314958	3
Insertion	Chr6	23543748	23543750	3
Insertion	Chr11	4866717	4866718	2	LOC_Os11g09140
Insertion	Chr11	6303029	6303030	2
Insertion	Chr11	19118308	19118309	2
Insertion	Chr3	25922648	25922649	2
Insertion	Chr5	3450958	3450959	2
Insertion	Chr6	23336427	23336428	2
Insertion	Chr7	9457953	9457954	2
Insertion	Chr8	25412077	25412078	2
Insertion	Chr9	7230648	7230649	2
Insertion	Chr10	7937728	7937728	1
Insertion	Chr10	17886409	17886409	1
Insertion	Chr3	26597078	26597078	1
Insertion	Chr4	10926517	10926517	1
Insertion	Chr4	20512565	20512565	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6505130	6508557	LOC_Os07g11770
Inversion	Chr7	6505142	6508558	LOC_Os07g11770
Inversion	Chr1	20255225	20270036

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	19019894	Chr1	3459890	LOC_Os01g07330
Translocation	Chr8	19019903	Chr1	3459454	LOC_Os01g07330

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