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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	536104	T-A	HET	INTERGENIC
SBS	Chr1	7870421	C-T	HET	INTERGENIC
SBS	Chr1	16633458	T-A	HET	INTERGENIC
SBS	Chr2	4203248	G-T	HOMO	INTERGENIC
SBS	Chr2	11995139	T-C	HOMO	INTERGENIC
SBS	Chr2	15495894	C-T	HOMO	UTR_3_PRIME
SBS	Chr3	20113392	T-C	HOMO	INTERGENIC
SBS	Chr3	20113393	C-A	HOMO	INTERGENIC
SBS	Chr4	4886135	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g08832
SBS	Chr4	7838059	T-C	HOMO	INTERGENIC
SBS	Chr4	13550754	C-T	HOMO	INTRON
SBS	Chr5	11078482	G-T	HET	INTRON
SBS	Chr5	19752515	C-T	HET	INTERGENIC
SBS	Chr6	14958271	T-C	HET	INTERGENIC
SBS	Chr7	9197336	A-T	HOMO	INTERGENIC
SBS	Chr7	19044128	T-C	HOMO	INTERGENIC
SBS	Chr7	19156138	C-T	HOMO	INTERGENIC
SBS	Chr8	8122590	C-G	HET	INTRON
SBS	Chr8	8561451	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14290
SBS	Chr8	8807498	C-T	HET	INTERGENIC
SBS	Chr9	7841936	A-G	HET	INTERGENIC
SBS	Chr10	711496	A-G	HET	INTERGENIC
SBS	Chr10	5949170	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g10760
SBS	Chr11	12750707	A-G	HET	INTRON
SBS	Chr12	1476770	T-G	HOMO	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2519493	2519500	7
Deletion	Chr9	2552913	2552924	11
Deletion	Chr4	3096480	3096481	1
Deletion	Chr7	4927309	4927310	1
Deletion	Chr9	5860066	5860077	11
Deletion	Chr6	6153458	6153459	1
Deletion	Chr8	9331001	9464000	133000	25
Deletion	Chr8	9471001	9988000	517000	79
Deletion	Chr8	10350731	10350736	5
Deletion	Chr4	10565342	10565348	6
Deletion	Chr8	10895417	10895428	11
Deletion	Chr11	10997552	10997563	11
Deletion	Chr6	15985001	16011000	26000	4
Deletion	Chr7	16676218	16676224	6
Deletion	Chr9	17606306	17606311	5
Deletion	Chr6	17980349	17980355	6
Deletion	Chr5	18706226	18706251	25
Deletion	Chr5	19464637	19464644	7
Deletion	Chr5	20355111	20355124	13
Deletion	Chr7	20835543	20835545	2
Deletion	Chr8	21108916	21108917	1
Deletion	Chr3	22628887	22628890	3	LOC_Os03g40700
Deletion	Chr1	23553890	23553892	2	2
Deletion	Chr3	24870184	24870185	1
Deletion	Chr6	26017574	26040398	22824	2
Deletion	Chr1	30588581	30588589	8
Deletion	Chr2	30717611	30717612	1
Deletion	Chr3	30793613	30793614	1
Deletion	Chr1	31230315	31230318	3	LOC_Os01g54280

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	11333763	11333763	1	LOC_Os10g21950
Insertion	Chr11	23446432	23446433	2
Insertion	Chr8	4309379	4309411	33
Insertion	Chr2	1521358	1521375	18
Insertion	Chr3	12930154	12930169	16	LOC_Os03g22510
Insertion	Chr11	13226315	13226324	10
Insertion	Chr7	3622399	3622407	9
Insertion	Chr1	42852503	42852508	6
Insertion	Chr12	10974998	10975003	6
Insertion	Chr11	6203339	6203342	4
Insertion	Chr2	18110886	18110888	3
Insertion	Chr8	18259593	18259595	3
Insertion	Chr10	1631428	1631429	2
Insertion	Chr2	19293462	19293463	2
Insertion	Chr3	25283995	25283996	2
Insertion	Chr4	34230146	34230147	2
Insertion	Chr5	16375533	16375534	2
Insertion	Chr6	10369851	10369852	2
Insertion	Chr7	3549873	3549874	2
Insertion	Chr11	1709375	1709375	1
Insertion	Chr5	19546902	19546902	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6717500	8552176

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	17399613	Chr7	6046279
Translocation	Chr10	17401764	Chr7	6046275

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