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Mutant Information

Mutant Name	FN-7 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-7 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4722888	T-C	HET	INTERGENIC
SBS	Chr4	1045218	T-C	Homo	INTERGENIC
SBS	Chr4	6916848	G-A	Homo	INTERGENIC
SBS	Chr6	16160629	C-A	Homo	INTRON

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	909121	909123	2
Deletion	Chr2	1839938	1839954	16
Deletion	Chr8	2463658	2463671	13
Deletion	Chr1	4703088	4703089	1
Deletion	Chr1	5048285	5048294	9
Deletion	Chr5	5539001	5563000	24000	3
Deletion	Chr5	6196119	6196162	43
Deletion	Chr5	6432777	6450226	17449	4
Deletion	Chr4	6885642	6885645	3
Deletion	Chr11	11388285	11388286	1	LOC_Os11g19764
Deletion	Chr10	11645885	11645886	1
Deletion	Chr1	14017163	14017172	9
Deletion	Chr10	15801894	15801912	18
Deletion	Chr3	27877004	27877011	7
Deletion	Chr1	37677793	37677798	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	7921271	7921272	2
Insertion	Chr4	4909179	4909180	2
Insertion	Chr3	29765418	29765418	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5539301	5754336
Inversion	Chr5	5715456	5754352	LOC_Os05g10510
Inversion	Chr3	33724060	34005981	LOC_Os03g59225

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1693980	Chr5	5712453
Translocation	Chr8	1694002	Chr5	5715456	LOC_Os05g10510