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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12682467	T-G	HET	INTRON
SBS	Chr1	27180197	A-T	HOMO	INTRON
SBS	Chr2	29495590	G-C	HOMO	INTERGENIC
SBS	Chr3	10789482	A-C	HET	INTERGENIC
SBS	Chr3	11534106	T-A	HOMO	INTERGENIC
SBS	Chr3	11534114	T-C	HOMO	INTERGENIC
SBS	Chr3	16835795	C-A	HET	INTERGENIC
SBS	Chr3	25780585	T-C	HOMO	INTERGENIC
SBS	Chr3	27054328	T-A	HOMO	INTERGENIC
SBS	Chr4	1815338	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03980
SBS	Chr4	13625697	G-T	HET	INTERGENIC
SBS	Chr4	13625698	G-T	HET	INTERGENIC
SBS	Chr4	15280456	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	19950274	G-T	HOMO	INTERGENIC
SBS	Chr4	21163227	C-T	HOMO	INTERGENIC
SBS	Chr4	26258120	C-A	HOMO	UTR_3_PRIME
SBS	Chr5	8767451	C-T	HET	INTRON
SBS	Chr6	13525600	C-T	HET	INTRON
SBS	Chr6	24670146	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g41210
SBS	Chr6	27894913	A-G	HET	INTERGENIC
SBS	Chr7	12984225	C-T	HET	INTERGENIC
SBS	Chr8	22951283	C-T	HOMO	INTERGENIC
SBS	Chr9	21046801	G-A	HOMO	UTR_5_PRIME
SBS	Chr10	12206886	T-C	HET	INTERGENIC
SBS	Chr10	20510952	C-G	HOMO	INTERGENIC
SBS	Chr11	12788717	G-A	HOMO	STOP_GAINED	LOC_Os11g22310
SBS	Chr11	17578997	A-C	HET	INTRON
SBS	Chr11	24908329	G-A	HET	INTERGENIC
SBS	Chr12	16862391	A-T	HET	INTERGENIC
SBS	Chr12	23063558	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g37570
SBS	Chr12	27207326	C-A	HET	INTERGENIC

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1118471	1118472	1
Deletion	Chr4	1136577	1136585	8	LOC_Os04g02900
Deletion	Chr1	2319385	2319402	17
Deletion	Chr1	3849226	3849236	10	LOC_Os01g07960
Deletion	Chr9	4224416	4224423	7
Deletion	Chr12	7397732	7397736	4
Deletion	Chr9	9735385	9735393	8
Deletion	Chr11	10586294	10586297	3
Deletion	Chr3	11486232	11486245	13
Deletion	Chr11	11544346	11544374	28
Deletion	Chr4	14065772	14065777	5
Deletion	Chr3	15150684	15150693	9	LOC_Os03g26530
Deletion	Chr6	16183186	16183193	7	LOC_Os06g28450
Deletion	Chr3	16377301	16377308	7	LOC_Os03g28420
Deletion	Chr12	16852104	16852106	2
Deletion	Chr4	16944201	16944202	1
Deletion	Chr2	17262407	17262408	1	LOC_Os02g29140
Deletion	Chr11	17570807	17570808	1
Deletion	Chr10	18352166	18352167	1
Deletion	Chr4	18392004	18392080	76
Deletion	Chr1	19189943	19189951	8
Deletion	Chr1	21369948	21369952	4
Deletion	Chr4	22028933	22028967	34
Deletion	Chr8	22248809	22248820	11
Deletion	Chr7	22747635	22747637	2
Deletion	Chr8	23850651	23850657	6	LOC_Os08g37650
Deletion	Chr3	24195937	24196100	163
Deletion	Chr5	24453442	24453446	4
Deletion	Chr8	27623137	27623143	6
Deletion	Chr4	28087366	28087367	1
Deletion	Chr7	28091298	28091319	21	LOC_Os07g47010
Deletion	Chr4	28519420	28519722	302	LOC_Os04g47960
Deletion	Chr3	30145856	30145859	3

Insertions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	15737652	15737652	1	LOC_Os07g27140
Insertion	Chr2	25361513	25361514	2
Insertion	Chr10	5961878	5961879	2
Insertion	Chr12	21795985	21795986	2
Insertion	Chr3	4143849	4143864	16
Insertion	Chr8	1209775	1209784	10
Insertion	Chr11	7535667	7535674	8
Insertion	Chr2	28851153	28851159	7
Insertion	Chr1	43242276	43242281	6
Insertion	Chr9	18154253	18154258	6
Insertion	Chr9	18174528	18174533	6
Insertion	Chr2	16468454	16468457	4	LOC_Os02g27810
Insertion	Chr4	31914425	31914428	4
Insertion	Chr5	6402287	6402290	4
Insertion	Chr2	30290909	30290911	3	LOC_Os02g49555
Insertion	Chr7	12108498	12108500	3
Insertion	Chr7	25272927	25272929	3
Insertion	Chr8	24023471	24023473	3
Insertion	Chr1	8956020	8956021	2
Insertion	Chr1	27134019	27134020	2	LOC_Os01g47470
Insertion	Chr1	27891734	27891735	2
Insertion	Chr1	39804019	39804020	2
Insertion	Chr10	18961710	18961711	2
Insertion	Chr12	18350022	18350023	2
Insertion	Chr2	6394878	6394879	2
Insertion	Chr7	29332646	29332647	2
Insertion	Chr8	26815767	26815768	2
Insertion	Chr9	9197671	9197672	2
Insertion	Chr9	10486654	10486655	2
Insertion	Chr2	29249980	29249980	1
Insertion	Chr4	2305618	2305618	1
Insertion	Chr7	5316619	5316619	1
Insertion	Chr9	20022822	20022822	1

No Inversion

No Translocation

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