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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7247453	T-A	HET	INTERGENIC
SBS	Chr1	24106645	G-A	HET	INTERGENIC
SBS	Chr1	41136975	T-A	HET	INTERGENIC
SBS	Chr2	16821976	C-T	HET	INTERGENIC
SBS	Chr3	151486	G-C	HET	INTERGENIC
SBS	Chr3	8487859	C-T	HET	UTR_5_PRIME
SBS	Chr3	8487860	C-T	HET	UTR_5_PRIME
SBS	Chr3	19099719	C-T	HET	INTERGENIC
SBS	Chr3	30215260	T-C	HOMO	INTERGENIC
SBS	Chr4	16942573	T-C	HOMO	INTERGENIC
SBS	Chr4	19656896	A-T	HOMO	INTERGENIC
SBS	Chr4	19656897	C-T	HOMO	INTERGENIC
SBS	Chr4	24825895	C-T	HOMO	INTRON
SBS	Chr5	12122345	C-T	HET	INTERGENIC
SBS	Chr5	21605272	C-T	HET	INTERGENIC
SBS	Chr5	24239037	T-A	HET	INTERGENIC
SBS	Chr6	615166	C-G	HOMO	INTERGENIC
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr6	16355098	T-A	HET	INTERGENIC
SBS	Chr6	21489093	T-A	HET	INTERGENIC
SBS	Chr6	26858058	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g44460
SBS	Chr7	1147953	C-T	HOMO	INTERGENIC
SBS	Chr7	12891480	C-T	HOMO	INTERGENIC
SBS	Chr7	28600893	C-T	HOMO	INTERGENIC
SBS	Chr8	9191549	C-T	HOMO	INTERGENIC
SBS	Chr8	12637664	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g21140
SBS	Chr8	16264354	G-A	HOMO	INTRON
SBS	Chr8	18808807	C-T	HOMO	INTRON
SBS	Chr9	4076991	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	4199948	G-C	HET	INTERGENIC
SBS	Chr9	5709653	G-C	HET	INTERGENIC
SBS	Chr9	7260839	G-A	HOMO	INTERGENIC
SBS	Chr10	1702930	A-T	HET	UTR_5_PRIME
SBS	Chr10	14167524	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr10	14174605	A-G	HOMO	INTERGENIC
SBS	Chr10	22540191	T-A	HET	INTERGENIC
SBS	Chr11	778173	C-T	HOMO	INTERGENIC
SBS	Chr11	15641551	C-A	HOMO	INTRON

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3072163	3072164	1
Deletion	Chr3	4052381	4052382	1
Deletion	Chr7	4255529	4255532	3
Deletion	Chr8	4433145	4433154	9
Deletion	Chr4	5577829	5577834	5
Deletion	Chr7	8388856	8388858	2
Deletion	Chr5	9109445	9109447	2	LOC_Os05g16110
Deletion	Chr5	9232879	9232886	7	LOC_Os05g16300
Deletion	Chr3	9472945	9472946	1
Deletion	Chr8	9660444	9660450	6
Deletion	Chr8	9667223	9667224	1
Deletion	Chr5	9679274	9679275	1
Deletion	Chr8	10546350	10546351	1
Deletion	Chr9	15948262	15948263	1
Deletion	Chr6	19781161	19781162	1	LOC_Os06g33970
Deletion	Chr4	20350384	20350390	6
Deletion	Chr12	20782912	20782923	11
Deletion	Chr4	20933866	20933910	44
Deletion	Chr4	21159541	21159544	3
Deletion	Chr10	21754398	21769514	15116	2
Deletion	Chr8	22026223	22026230	7
Deletion	Chr9	22185518	22185519	1
Deletion	Chr3	22542587	22542588	1
Deletion	Chr4	23750601	23750606	5	LOC_Os04g39880
Deletion	Chr1	25353737	25353739	2
Deletion	Chr6	26024043	26024044	1
Deletion	Chr6	26857814	26857820	6
Deletion	Chr5	27596623	27596624	1
Deletion	Chr4	30608633	30608642	9
Deletion	Chr1	35868650	35868662	12

Insertions: 39

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	13841598	13841609	12
Insertion	Chr2	18588040	18588050	11
Insertion	Chr7	11008823	11008832	10
Insertion	Chr9	10970100	10970109	10
Insertion	Chr5	5272938	5272945	8
Insertion	Chr2	20036592	20036597	6
Insertion	Chr2	28389878	28389883	6
Insertion	Chr3	381152	381157	6
Insertion	Chr3	10202816	10202821	6
Insertion	Chr6	24395000	24395005	6
Insertion	Chr1	24753524	24753527	4
Insertion	Chr12	10248205	10248208	4
Insertion	Chr12	25929890	25929893	4
Insertion	Chr2	24146279	24146282	4
Insertion	Chr2	35642098	35642101	4
Insertion	Chr3	15159939	15159942	4
Insertion	Chr9	4743399	4743402	4
Insertion	Chr10	2585702	2585704	3
Insertion	Chr11	7130481	7130483	3
Insertion	Chr1	2329880	2329881	2
Insertion	Chr10	2238013	2238014	2
Insertion	Chr10	3386610	3386611	2
Insertion	Chr11	18385827	18385828	2
Insertion	Chr11	19602193	19602194	2
Insertion	Chr2	16516655	16516656	2
Insertion	Chr2	17850754	17850755	2
Insertion	Chr2	17969345	17969346	2
Insertion	Chr6	18140404	18140405	2
Insertion	Chr8	6732451	6732452	2
Insertion	Chr8	21075346	21075347	2
Insertion	Chr9	7424773	7424774	2
Insertion	Chr9	15067187	15067188	2
Insertion	Chr9	17213099	17213100	2
Insertion	Chr1	1028117	1028117	1
Insertion	Chr11	15537415	15537415	1
Insertion	Chr11	23843690	23843690	1
Insertion	Chr3	25777435	25777435	1
Insertion	Chr9	18262261	18262261	1
Insertion	Chr9	22046370	22046370	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13325345	14791776
Inversion	Chr7	20149467	20385976	LOC_Os07g33710

No Translocation

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