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Mutant Information

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	3393632	G-A	HET	INTERGENIC
SBS	Chr1	5326889	G-A	HET	INTERGENIC
SBS	Chr1	21309711	G-A	HET	INTERGENIC
SBS	Chr2	6118514	G-T	HET	UTR_3_PRIME
SBS	Chr4	10602933	T-A	HOMO	INTERGENIC
SBS	Chr4	20498695	T-C	HOMO	INTERGENIC
SBS	Chr4	28784429	G-A	HOMO	INTERGENIC
SBS	Chr6	6574174	T-G	HOMO	INTERGENIC
SBS	Chr6	30436203	G-A	HOMO	INTRON
SBS	Chr7	5987168	C-T	HET	INTERGENIC
SBS	Chr7	19011086	C-T	HOMO	INTERGENIC
SBS	Chr7	20783800	G-A	HOMO	INTRON
SBS	Chr8	9089638	A-T	HET	INTERGENIC
SBS	Chr8	13777220	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	11301773	C-T	HET	INTRON

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1072538	1075890	3352	LOC_Os12g02910
Deletion	Chr2	2194230	2194233	3
Deletion	Chr1	2822733	2822735	2
Deletion	Chr7	4106177	4106178	1
Deletion	Chr3	4941658	4941668	10	LOC_Os03g09920
Deletion	Chr4	4986423	4986426	3
Deletion	Chr12	5142168	5142172	4
Deletion	Chr2	5565413	5565424	11
Deletion	Chr8	6089457	6089489	32
Deletion	Chr7	7051152	7051153	1
Deletion	Chr10	7535242	7535254	12
Deletion	Chr10	7535246	7535258	12
Deletion	Chr8	9775829	9775867	38
Deletion	Chr2	10268810	10268815	5
Deletion	Chr12	10352574	10352580	6
Deletion	Chr5	13287153	13287156	3
Deletion	Chr3	17871527	17871533	6
Deletion	Chr12	18298126	18298127	1
Deletion	Chr1	19741787	19741791	4	LOC_Os01g35640
Deletion	Chr7	21831296	21831303	7
Deletion	Chr2	22345079	22345080	1
Deletion	Chr5	23711566	23711567	1
Deletion	Chr11	24570374	24570391	17
Deletion	Chr4	24981423	24981446	23
Deletion	Chr7	27420066	27420070	4
Deletion	Chr4	29738288	29738299	11
Deletion	Chr2	30142167	30142172	5

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	35952760	35952760	1
Insertion	Chr3	25966274	25966325	52
Insertion	Chr10	10391464	10391489	26
Insertion	Chr8	16396233	16396258	26
Insertion	Chr6	23644970	23644990	21
Insertion	Chr8	16643115	16643128	14
Insertion	Chr10	19466856	19466865	10
Insertion	Chr10	2210731	2210736	6
Insertion	Chr5	22078777	22078782	6
Insertion	Chr12	6728873	6728876	4
Insertion	Chr2	19802174	19802177	4
Insertion	Chr8	13372761	13372764	4
Insertion	Chr11	19603304	19603306	3
Insertion	Chr6	21421115	21421117	3
Insertion	Chr9	14947077	14947079	3
Insertion	Chr11	16764607	16764608	2
Insertion	Chr12	5800744	5800745	2
Insertion	Chr2	25286812	25286813	2
Insertion	Chr3	1257473	1257474	2
Insertion	Chr7	29661649	29661650	2
Insertion	Chr11	10456187	10456187	1
Insertion	Chr4	9158992	9158992	1

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1072542	Chr2	15916828	2
Translocation	Chr12	1075867	Chr2	15916882	LOC_Os02g27070

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