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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6050475	G-A	HET	INTERGENIC
SBS	Chr1	21019371	A-C	HOMO	INTRON
SBS	Chr1	40322291	T-A	HOMO	INTERGENIC
SBS	Chr3	522142	A-G	HET	INTERGENIC
SBS	Chr3	36000761	A-G	HET	INTERGENIC
SBS	Chr4	1329207	T-A	HET	INTERGENIC
SBS	Chr4	4960751	C-A	HET	INTERGENIC
SBS	Chr4	18141335	C-G	HOMO	INTERGENIC
SBS	Chr4	23381239	G-A	HOMO	INTERGENIC
SBS	Chr5	5154448	C-A	HOMO	INTRON
SBS	Chr6	12887652	G-A	HOMO	INTERGENIC
SBS	Chr6	15621721	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g27610
SBS	Chr7	6657275	A-C	HET	INTERGENIC
SBS	Chr7	13491290	G-A	HET	INTRON
SBS	Chr7	15101499	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g26260
SBS	Chr7	16776387	G-A	HET	INTERGENIC
SBS	Chr7	25113487	C-T	HOMO	INTERGENIC
SBS	Chr8	9601011	G-A	HOMO	INTERGENIC
SBS	Chr8	11002016	G-A	HOMO	INTERGENIC
SBS	Chr8	12393112	T-G	HET	INTERGENIC
SBS	Chr8	16110922	C-T	HET	INTERGENIC
SBS	Chr8	16950023	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27824
SBS	Chr8	17598255	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	7323076	G-T	HET	INTERGENIC
SBS	Chr9	9269768	G-A	HET	INTERGENIC
SBS	Chr9	19528334	G-A	HET	INTERGENIC
SBS	Chr10	4449157	A-G	HOMO	INTERGENIC
SBS	Chr10	22072854	G-A	HET	INTERGENIC
SBS	Chr11	168192	G-A	HET	INTERGENIC
SBS	Chr11	8485918	C-A	HET	STOP_GAINED	LOC_Os11g15080
SBS	Chr11	9236068	A-G	HET	INTRON
SBS	Chr11	10378174	G-A	HOMO	INTERGENIC
SBS	Chr11	20288500	G-A	HET	INTERGENIC
SBS	Chr12	14673649	C-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2576580	2576588	8
Deletion	Chr5	5384025	5384026	1
Deletion	Chr7	6581962	6583481	1519
Deletion	Chr5	6912260	6912262	2
Deletion	Chr9	8701487	8701490	3
Deletion	Chr5	12431472	12431473	1
Deletion	Chr3	17234853	17234856	3
Deletion	Chr3	19579296	19579325	29
Deletion	Chr2	20300897	20300904	7
Deletion	Chr11	21861785	21861802	17	LOC_Os11g37040
Deletion	Chr6	24191771	24191785	14
Deletion	Chr7	25115082	25115085	3
Deletion	Chr6	25982146	25982147	1
Deletion	Chr1	27466515	27466516	1
Deletion	Chr2	28482143	28482151	8
Deletion	Chr1	28706485	28706490	5
Deletion	Chr2	30907507	30907513	6	LOC_Os02g50610
Deletion	Chr3	33658236	33658261	25
Deletion	Chr1	40322670	40322677	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	22324205	22324205	1
Insertion	Chr1	40759266	40759266	1
Insertion	Chr3	3462041	3462041	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr7	6582156	Chr2	30836081
Translocation	Chr7	6583449	Chr2	30837410
Translocation	Chr7	26406409	Chr2	30836096

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