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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10056801	G-A	HET	INTERGENIC
SBS	Chr1	15432958	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27670
SBS	Chr1	41867788	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g72205
SBS	Chr10	14952411	G-A	HET	INTERGENIC
SBS	Chr10	2391811	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g04900
SBS	Chr11	17099217	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29470
SBS	Chr11	24579715	C-T	HOMO	INTERGENIC
SBS	Chr12	9186383	G-T	HOMO	INTERGENIC
SBS	Chr2	24044225	T-A	HET	INTERGENIC
SBS	Chr2	4418193	C-T	HET	INTERGENIC
SBS	Chr3	16878134	A-T	HET	INTERGENIC
SBS	Chr3	19434461	T-G	HET	INTERGENIC
SBS	Chr3	2610972	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05340
SBS	Chr3	5841583	C-T	HOMO	INTRON
SBS	Chr3	8035661	G-A	HOMO	INTERGENIC
SBS	Chr3	8701211	A-G	HOMO	INTRON
SBS	Chr4	5936986	T-C	HET	INTERGENIC
SBS	Chr4	5936987	C-A	HET	INTERGENIC
SBS	Chr4	6634442	A-T	HET	UTR_5_PRIME
SBS	Chr5	11427587	G-A	HET	INTERGENIC
SBS	Chr5	11988144	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20430
SBS	Chr5	15275535	G-T	HOMO	INTRON
SBS	Chr6	11136604	T-G	HET	INTERGENIC
SBS	Chr7	14130775	C-A	HET	INTRON
SBS	Chr7	25874499	T-A	HET	INTERGENIC
SBS	Chr7	3294345	C-A	HET	INTERGENIC
SBS	Chr8	1515578	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g03270
SBS	Chr8	4245982	T-A	HOMO	INTERGENIC
SBS	Chr8	7254544	G-T	HET	INTERGENIC
SBS	Chr9	8885925	T-C	HOMO	INTERGENIC

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1674494	1674499	5	LOC_Os11g04130
Deletion	Chr1	6138545	6138563	18	LOC_Os01g11414
Deletion	Chr6	7622142	7622174	32	LOC_Os06g13750
Deletion	Chr7	8550001	9138000	588000	78
Deletion	Chr12	13741495	13741514	19
Deletion	Chr3	14717673	14717676	3	LOC_Os03g25710
Deletion	Chr4	16229885	16229889	4
Deletion	Chr1	18385189	18385196	7
Deletion	Chr7	26356549	26357850	1301	LOC_Os07g44090
Deletion	Chr3	30888001	30970000	82000	15

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	9056951	9056965	15	LOC_Os08g15010

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1803567	2384700	LOC_Os08g04770

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	12980915	Chr3	30887639	LOC_Os03g53860
Translocation	Chr7	12981057	Chr3	30969820	LOC_Os03g54020
Translocation	Chr6	26916829	Chr3	30887614	2
Translocation	Chr6	29519077	Chr4	7105056	LOC_Os06g48770
Translocation	Chr6	29519078	Chr4	7096533	LOC_Os06g48770

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