Search Results
Mutant Information |
---|
Mutant Name | FN-74 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-74 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 30
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 10056801 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 15432958 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g27670 |
SBS | Chr1 | 41867788 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g72205 |
SBS | Chr2 | 4418193 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 24044225 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 2610972 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g05340 |
SBS | Chr3 | 5841583 | C-T | HOMO | INTRON | |
SBS | Chr3 | 8035661 | G-A | HOMO | INTERGENIC | |
SBS | Chr3 | 8701211 | A-G | HOMO | INTRON | |
SBS | Chr3 | 16878134 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 19434461 | T-G | HET | INTERGENIC | |
SBS | Chr4 | 5936986 | T-C | HET | INTERGENIC | |
SBS | Chr4 | 5936987 | C-A | HET | INTERGENIC | |
SBS | Chr4 | 6634442 | A-T | HET | UTR_5_PRIME | |
SBS | Chr5 | 11427587 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 11988144 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g20430 |
SBS | Chr5 | 15275535 | G-T | HOMO | INTRON | |
SBS | Chr6 | 11136604 | T-G | HET | INTERGENIC | |
SBS | Chr7 | 3294345 | C-A | HET | INTERGENIC | |
SBS | Chr7 | 14130775 | C-A | HET | INTRON | |
SBS | Chr7 | 25874499 | T-A | HET | INTERGENIC | |
SBS | Chr8 | 1515578 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g03270 |
SBS | Chr8 | 4245982 | T-A | HOMO | INTERGENIC | |
SBS | Chr8 | 7254544 | G-T | HET | INTERGENIC | |
SBS | Chr9 | 8885925 | T-C | HOMO | INTERGENIC | |
SBS | Chr10 | 2391811 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g04900 |
SBS | Chr10 | 14952411 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 17099217 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g29470 |
SBS | Chr11 | 24579715 | C-T | HOMO | INTERGENIC | |
SBS | Chr12 | 9186383 | G-T | HOMO | INTERGENIC |
Deletions: 10
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr11 | 1674494 | 1674499 | 5 | LOC_Os11g04130 |
Deletion | Chr1 | 6138545 | 6138563 | 18 | LOC_Os01g11414 |
Deletion | Chr6 | 7622142 | 7622174 | 32 | LOC_Os06g13750 |
Deletion | Chr7 | 8550001 | 9138000 | 588000 | 78 |
Deletion | Chr12 | 13741495 | 13741514 | 19 | |
Deletion | Chr3 | 14717673 | 14717676 | 3 | LOC_Os03g25710 |
Deletion | Chr4 | 16229885 | 16229889 | 4 | |
Deletion | Chr1 | 18385189 | 18385196 | 7 | |
Deletion | Chr7 | 26356549 | 26357850 | 1301 | LOC_Os07g44090 |
Deletion | Chr3 | 30888001 | 30970000 | 82000 | 15 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr8 | 9056951 | 9056965 | 15 | LOC_Os08g15010 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 1803567 | 2384700 | LOC_Os08g04770 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr7 | 12980915 | Chr3 | 30887639 | LOC_Os03g53860 |
Translocation | Chr7 | 12981057 | Chr3 | 30969820 | LOC_Os03g54020 |
Translocation | Chr6 | 26916829 | Chr3 | 30887614 | 2 |
Translocation | Chr6 | 29519077 | Chr4 | 7105056 | LOC_Os06g48770 |
Translocation | Chr6 | 29519078 | Chr4 | 7096533 | LOC_Os06g48770 |