Search Results
| Mutant Information |
|---|
| Mutant Name | FN-75 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-75 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 27547848 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 7420905 | C-T | HOMO | INTRON | |
| SBS | Chr4 | 22642831 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 33511067 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 1614348 | G-C | HET | INTERGENIC | |
| SBS | Chr5 | 7000523 | G-C | HET | INTRON | |
| SBS | Chr5 | 9689990 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 16823315 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 14868735 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 21588246 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 21733337 | A-G | HET | INTRON | |
| SBS | Chr7 | 21876694 | A-C | HET | INTERGENIC | |
| SBS | Chr7 | 27680609 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 27989899 | A-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 23312672 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 28202685 | G-T | HOMO | UTR_5_PRIME | |
| SBS | Chr9 | 1773557 | T-C | HET | INTRON | |
| SBS | Chr9 | 9216872 | A-G | HET | INTRON | |
| SBS | Chr9 | 11676264 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g19510 |
| SBS | Chr12 | 15172477 | C-T | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 4117579 | 4117588 | 9 | |
| Deletion | Chr12 | 9989534 | 9989544 | 10 | |
| Deletion | Chr3 | 10103126 | 10103146 | 20 | |
| Deletion | Chr3 | 10718875 | 10718880 | 5 | |
| Deletion | Chr12 | 10794803 | 10794816 | 13 | |
| Deletion | Chr12 | 14312355 | 14312356 | 1 | LOC_Os12g24920 |
| Deletion | Chr12 | 14910779 | 14910783 | 4 | |
| Deletion | Chr10 | 15270081 | 15270083 | 2 | |
| Deletion | Chr5 | 17711119 | 17711127 | 8 | |
| Deletion | Chr9 | 22276473 | 22276498 | 25 | LOC_Os09g38768 |
| Deletion | Chr9 | 22351210 | 22351220 | 10 | LOC_Os09g38910 |
| Deletion | Chr3 | 22741755 | 22741765 | 10 | LOC_Os03g40920 |
| Deletion | Chr3 | 22980548 | 22980549 | 1 | |
| Deletion | Chr3 | 22980552 | 22980553 | 1 | |
| Deletion | Chr7 | 23976858 | 23976862 | 4 | |
| Deletion | Chr5 | 26964702 | 26964704 | 2 | LOC_Os05g46570 |
| Deletion | Chr1 | 30315846 | 30315849 | 3 | LOC_Os01g52710 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 3255931 | 3255932 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 15921267 | 16260637 | |
| Inversion | Chr6 | 15929656 | 16260646 | LOC_Os06g28060 |
No Translocation