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Mutant Information

Mutant Name	FN-77 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-77 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22831326	G-T	HET	INTERGENIC
SBS	Chr10	14232043	G-C	HET	INTERGENIC
SBS	Chr10	22371438	A-G	HET	INTERGENIC
SBS	Chr11	10592802	A-C	HET	INTRON
SBS	Chr12	10258420	C-T	HOMO	INTRON
SBS	Chr12	21764955	T-G	HET	INTRON
SBS	Chr3	32680788	A-T	HET	INTRON
SBS	Chr4	18933059	G-A	HOMO	INTERGENIC
SBS	Chr5	15802620	C-T	HOMO	INTRON
SBS	Chr5	21212124	A-G	HET	INTRON
SBS	Chr7	21357983	T-A	HOMO	INTERGENIC
SBS	Chr9	10852116	T-G	HET	INTRON
SBS	Chr9	13529052	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g22400
SBS	Chr9	14353132	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g24170
SBS	Chr9	22230234	C-A	HET	INTERGENIC
SBS	Chr9	744923	A-G	HET	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1861548	1861553	5	LOC_Os10g04050
Deletion	Chr6	2798567	2798577	10
Deletion	Chr10	3360036	3360038	2	LOC_Os10g06540
Deletion	Chr11	5463521	5463536	15
Deletion	Chr2	9618078	9649819	31741	6
Deletion	Chr11	13125048	13125058	10
Deletion	Chr2	13774747	13774750	3
Deletion	Chr3	20310001	20344000	34000	6
Deletion	Chr8	20648292	20648293	1
Deletion	Chr12	21263001	21284000	21000	5
Deletion	Chr6	23335731	23335732	1
Deletion	Chr5	25225618	25225619	1	LOC_Os05g43380
Deletion	Chr8	26120001	26476000	356000	56
Deletion	Chr2	30208550	30208560	10
Deletion	Chr3	32210761	32210764	3	LOC_Os03g56540
Deletion	Chr3	36362656	36362669	13

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8246110	8364240	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	29424069	Chr2	9642974	LOC_Os03g51430
Translocation	Chr3	29424081	Chr2	9644731	2