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| Mutant Information |
|---|
| Mutant Name | FN-78 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-78 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11092265 | C-A | HET | INTRON | |
| SBS | Chr1 | 1352843 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 40133323 | T-C | HET | INTRON | |
| SBS | Chr10 | 12427593 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 12863644 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 15386550 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 18374949 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 3192187 | G-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 8601386 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 17441721 | A-T | HET | INTRON | |
| SBS | Chr11 | 17441722 | A-T | HET | INTRON | |
| SBS | Chr11 | 9872727 | C-T | HET | INTRON | |
| SBS | Chr12 | 19886620 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 24939277 | G-T | HOMO | INTRON | |
| SBS | Chr2 | 27088884 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 9672633 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g16960 |
| SBS | Chr3 | 31275938 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 18395644 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 4458312 | T-A | HET | INTRON | |
| SBS | Chr6 | 24925927 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 25573907 | G-A | HET | INTRON | |
| SBS | Chr6 | 2561219 | T-A | HOMO | INTRON | |
| SBS | Chr6 | 2561220 | T-A | HOMO | INTRON | |
| SBS | Chr6 | 26238325 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 30266550 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g49970 |
| SBS | Chr7 | 301560 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 7853027 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g13680 |
| SBS | Chr8 | 2315331 | T-A | HOMO | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2449454 | 2488258 | 38804 | 4 |
| Deletion | Chr8 | 3026772 | 3026781 | 9 | LOC_Os08g05660 |
| Deletion | Chr7 | 7076239 | 7076251 | 12 | |
| Deletion | Chr5 | 8409388 | 8409392 | 4 | |
| Deletion | Chr4 | 8596806 | 8596808 | 2 | |
| Deletion | Chr12 | 12308020 | 12308546 | 526 | LOC_Os12g21860 |
| Deletion | Chr7 | 13660996 | 13661009 | 13 | LOC_Os07g24100 |
| Deletion | Chr3 | 15979708 | 15979713 | 5 | |
| Deletion | Chr8 | 20576875 | 20576880 | 5 | |
| Deletion | Chr12 | 21164447 | 21164468 | 21 | |
| Deletion | Chr4 | 21342500 | 21342542 | 42 | LOC_Os04g35114 |
| Deletion | Chr5 | 25196716 | 25196717 | 1 | |
| Deletion | Chr11 | 26953874 | 26953888 | 14 | LOC_Os11g44580 |
| Deletion | Chr7 | 27712086 | 27712087 | 1 | |
| Deletion | Chr1 | 30318605 | 30318616 | 11 | |
| Deletion | Chr6 | 31214921 | 31214941 | 20 | |
| Deletion | Chr1 | 32622707 | 32622712 | 5 | LOC_Os01g56580 |
| Deletion | Chr2 | 33277403 | 33277408 | 5 | LOC_Os02g54270 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 19533239 | 19582412 | LOC_Os07g32710 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 12308061 | Chr10 | 15455929 | LOC_Os12g21860 |
| Translocation | Chr12 | 12308535 | Chr10 | 15455911 | LOC_Os12g21860 |