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Mutant Information

Mutant Name	FN-8 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-8 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27206905	T-A	Homo	INTERGENIC
SBS	Chr3	19315672	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g33790
SBS	Chr3	20562723	T-G	Homo	INTERGENIC
SBS	Chr3	30157618	C-T	Homo	INTRON
SBS	Chr5	12179705	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr5	12804950	G-A	Homo	INTERGENIC
SBS	Chr5	16668475	A-C	Homo	INTRON
SBS	Chr5	21739558	C-T	Homo	UTR_3_PRIME
SBS	Chr5	22734832	C-T	Homo	INTERGENIC
SBS	Chr5	23192086	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g39520
SBS	Chr7	8563563	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr7	25702314	G-A	Homo	INTRON
SBS	Chr7	27233771	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	21316206	C-T	Homo	STOP_GAINED	LOC_Os08g34020
SBS	Chr8	24826593	A-T	Homo	INTERGENIC
SBS	Chr9	3997712	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	187577	187582	5
Deletion	Chr6	5065521	5065525	4
Deletion	Chr6	6790913	6790921	8	LOC_Os06g12510
Deletion	Chr3	7731952	7731953	1
Deletion	Chr12	9126216	9126217	1
Deletion	Chr6	11216109	11216123	14
Deletion	Chr3	12308515	12308696	181	LOC_Os03g21540
Deletion	Chr9	16705518	16705522	4
Deletion	Chr3	27057093	27057102	9	LOC_Os03g47740
Deletion	Chr3	28691826	28691866	40
Deletion	Chr5	28963525	28963527	2	LOC_Os05g50510
Deletion	Chr2	32425805	32425813	8

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	14740268	14740273	6
Insertion	Chr2	1417698	1417699	2	LOC_Os02g03480
Insertion	Chr2	21772380	21772381	2
Insertion	Chr9	9495466	9495467	2
Insertion	Chr2	14697465	14697465	1
Insertion	Chr3	35164442	35164442	1
Insertion	Chr4	7471318	7471318	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13542421	14077128
Inversion	Chr1	13542433	14077138
Inversion	Chr3	26140256	26304023
Inversion	Chr3	31681492	31682144	2
Inversion	Chr3	31681516	31682149	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7344207	Chr1	17344016	LOC_Os01g31680