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Mutant Information

Mutant Name	FN-80 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-80 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	2581346	A-T	HET	INTERGENIC
SBS	Chr2	2581347	G-T	HET	INTERGENIC
SBS	Chr2	3520128	A-T	HET	INTERGENIC
SBS	Chr2	15393649	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26200
SBS	Chr2	15393650	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26200
SBS	Chr3	15451787	T-A	HOMO	INTERGENIC
SBS	Chr3	34281622	T-A	HOMO	INTERGENIC
SBS	Chr4	9944752	A-G	HET	INTRON
SBS	Chr4	15452260	G-T	HET	INTERGENIC
SBS	Chr4	15452265	A-T	HET	INTERGENIC
SBS	Chr4	18122596	C-G	HET	INTRON
SBS	Chr4	22334892	T-C	HOMO	INTERGENIC
SBS	Chr5	9592911	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16824
SBS	Chr6	15776594	T-C	HET	INTERGENIC
SBS	Chr8	6370117	C-T	HOMO	INTERGENIC
SBS	Chr8	10413651	A-T	HET	INTERGENIC
SBS	Chr9	9097210	C-A	HET	INTRON
SBS	Chr11	18572080	A-C	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	983508	983510	2
Deletion	Chr2	1600355	1600365	10
Deletion	Chr12	2686001	2822000	136000	21
Deletion	Chr9	5442964	5442968	4
Deletion	Chr4	5809512	5809518	6
Deletion	Chr6	7256780	7256783	3
Deletion	Chr3	11847142	11847143	1
Deletion	Chr3	11985601	11985602	1
Deletion	Chr11	14317849	14317853	4
Deletion	Chr6	15277995	15278006	11
Deletion	Chr11	16160417	16160424	7
Deletion	Chr8	19629255	19629260	5
Deletion	Chr8	22016958	22016962	4
Deletion	Chr12	22249896	22249897	1
Deletion	Chr5	24933001	24955000	22000	5
Deletion	Chr1	30076423	30076425	2	LOC_Os01g52330
Deletion	Chr1	34599058	34599060	2

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	43172145	43172147	3	LOC_Os01g74540

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	25967524	26862929

No Translocation