Search Results
| Mutant Information |
|---|
| Mutant Name | FN-81 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-81 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14004677 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 28317517 | G-C | HET | INTERGENIC | |
| SBS | Chr2 | 13656979 | G-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 20320385 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34020 |
| SBS | Chr2 | 26164165 | T-C | HOMO | UTR_5_PRIME | |
| SBS | Chr3 | 23552634 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 32520630 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 21535633 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 30470646 | G-C | HET | INTRON | |
| SBS | Chr5 | 4582177 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g08400 |
| SBS | Chr5 | 8418567 | T-C | HET | INTRON | |
| SBS | Chr5 | 19498140 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 24724013 | G-C | HET | INTERGENIC | |
| SBS | Chr6 | 13406267 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 14749019 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g25210 |
| SBS | Chr6 | 25376669 | A-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 8716231 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 9300138 | C-T | HET | INTRON | |
| SBS | Chr7 | 9889332 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 10322747 | A-C | HET | INTRON | |
| SBS | Chr7 | 12834746 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 13894133 | C-T | HET | INTRON | |
| SBS | Chr7 | 28706966 | T-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 3055711 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g05690 |
| SBS | Chr8 | 3055712 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g05690 |
| SBS | Chr8 | 7070524 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g12020 |
| SBS | Chr9 | 4609851 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g08740 |
| SBS | Chr9 | 8330241 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14070 |
| SBS | Chr9 | 9286445 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 196858 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g01330 |
| SBS | Chr11 | 196859 | T-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 10793859 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 19579392 | T-C | HET | INTRON |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 270001 | 292000 | 22000 | 6 |
| Deletion | Chr5 | 2394445 | 2394477 | 32 | |
| Deletion | Chr10 | 3125176 | 3125184 | 8 | |
| Deletion | Chr9 | 3385585 | 3385590 | 5 | |
| Deletion | Chr3 | 4636756 | 4637007 | 251 | |
| Deletion | Chr3 | 7509569 | 7509577 | 8 | LOC_Os03g13850 |
| Deletion | Chr7 | 10644504 | 10644505 | 1 | |
| Deletion | Chr7 | 12850268 | 12850276 | 8 | |
| Deletion | Chr6 | 13168287 | 13168528 | 241 | |
| Deletion | Chr9 | 13388325 | 13388348 | 23 | LOC_Os09g22100 |
| Deletion | Chr3 | 14683066 | 14683068 | 2 | |
| Deletion | Chr3 | 15501629 | 15501639 | 10 | |
| Deletion | Chr3 | 16103075 | 16103082 | 7 | LOC_Os03g28010 |
| Deletion | Chr10 | 17719149 | 17719154 | 5 | |
| Deletion | Chr1 | 17727552 | 17727553 | 1 | |
| Deletion | Chr7 | 21287742 | 21287746 | 4 | |
| Deletion | Chr10 | 21396396 | 21396405 | 9 | LOC_Os10g39950 |
| Deletion | Chr12 | 23456454 | 23456455 | 1 | |
| Deletion | Chr5 | 27325001 | 27505000 | 180000 | 27 |
| Deletion | Chr4 | 27845876 | 27845880 | 4 | LOC_Os04g46970 |
| Deletion | Chr6 | 30471289 | 30471290 | 1 | |
| Deletion | Chr2 | 34907437 | 34907443 | 6 | |
| Deletion | Chr1 | 42795035 | 42795040 | 5 |
No Insertion
No Inversion
No Translocation