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| Mutant Information |
|---|
| Mutant Name | FN-84 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-84 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12928092 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 14137934 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr1 | 15043653 | C-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g27000 |
| SBS | Chr1 | 15857523 | G-A | HET | INTRON | |
| SBS | Chr1 | 21934530 | T-C | HOMO | INTRON | |
| SBS | Chr1 | 4833951 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 569706 | A-G | HET | INTRON | |
| SBS | Chr11 | 13892669 | T-C | HOMO | INTRON | |
| SBS | Chr11 | 13987184 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g24530 |
| SBS | Chr11 | 1399635 | G-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 23955425 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 18616583 | T-A | HET | INTERGENIC | |
| SBS | Chr2 | 1909558 | T-G | HET | INTRON | |
| SBS | Chr3 | 10365414 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 10365415 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 17693803 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 28339119 | T-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 28402763 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 30150290 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 1056345 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 26717834 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 29895224 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g52070 |
| SBS | Chr5 | 335888 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 18427843 | T-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 25045907 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g39580 |
| SBS | Chr9 | 8091698 | G-A | HET | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1207419 | 1207424 | 5 | |
| Deletion | Chr10 | 2828927 | 2828933 | 6 | |
| Deletion | Chr10 | 4680662 | 4680663 | 1 | |
| Deletion | Chr9 | 5501001 | 5527000 | 26000 | 7 |
| Deletion | Chr6 | 8828659 | 8828666 | 7 | LOC_Os06g15570 |
| Deletion | Chr2 | 13219236 | 13219274 | 38 | |
| Deletion | Chr3 | 14941124 | 14941128 | 4 | |
| Deletion | Chr1 | 15425042 | 15425056 | 14 | |
| Deletion | Chr11 | 16339533 | 16339537 | 4 | |
| Deletion | Chr9 | 16394874 | 16394875 | 1 | |
| Deletion | Chr10 | 20108574 | 20108589 | 15 | |
| Deletion | Chr6 | 21066912 | 21066916 | 4 | LOC_Os06g36050 |
| Deletion | Chr2 | 26279702 | 26279732 | 30 | |
| Deletion | Chr3 | 27851705 | 27851706 | 1 | LOC_Os03g48904 |
| Deletion | Chr4 | 28230291 | 28230300 | 9 | |
| Deletion | Chr3 | 30493138 | 30493141 | 3 | |
| Deletion | Chr1 | 33270279 | 33270282 | 3 | |
| Deletion | Chr4 | 34914739 | 34914744 | 5 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 25566682 | 25702962 | LOC_Os04g43420 |
No Translocation