Search Nipponbare

Mutant Information

Mutant Name	FN-86 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-86 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10353457	A-G	HOMO	INTERGENIC
SBS	Chr1	20580952	A-T	HOMO	INTERGENIC
SBS	Chr1	20670665	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37050
SBS	Chr1	21566240	A-C	HOMO	INTERGENIC
SBS	Chr1	30479589	T-A	HET	INTERGENIC
SBS	Chr1	40674142	A-G	HET	INTERGENIC
SBS	Chr10	11446456	T-G	HET	INTERGENIC
SBS	Chr11	1085592	G-A	HET	INTERGENIC
SBS	Chr11	15767452	T-C	HET	INTERGENIC
SBS	Chr11	5617750	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10340
SBS	Chr2	22349621	A-G	HET	INTERGENIC
SBS	Chr2	3524581	C-T	HOMO	INTRON
SBS	Chr3	16419419	G-A	HOMO	INTERGENIC
SBS	Chr3	24810696	G-A	HET	INTRON
SBS	Chr4	30216291	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g51040
SBS	Chr4	4145159	G-T	HET	INTERGENIC
SBS	Chr5	1679745	G-T	HOMO	INTERGENIC
SBS	Chr6	29474693	G-A	HET	INTERGENIC
SBS	Chr8	402436	T-A	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3303841	3303861	20	LOC_Os02g06584
Deletion	Chr5	7033299	7033301	2
Deletion	Chr12	11429014	11429020	6	LOC_Os12g19590
Deletion	Chr1	14258094	14258098	4
Deletion	Chr7	17422066	17422067	1
Deletion	Chr1	18253353	18253355	2
Deletion	Chr1	21356375	21356377	2
Deletion	Chr3	23789354	23789374	20	LOC_Os03g42730
Deletion	Chr11	26568396	26568432	36
Deletion	Chr6	29784001	29801000	17000	5
Deletion	Chr1	30932001	30951000	19000	4
Deletion	Chr3	32758058	32758065	7

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	19122047	19122050	4
Insertion	Chr7	21289435	21289435	1

No Inversion

No Translocation