Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-87 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-87 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 33979132 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 34999930 | G-T | HET | INTRON | |
| SBS | Chr1 | 35104127 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 3950501 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 5515955 | G-A | HET | INTRON | |
| SBS | Chr11 | 18139043 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 7587452 | G-A | HOMO | UTR_5_PRIME | |
| SBS | Chr12 | 1073673 | A-C | HOMO | INTRON | |
| SBS | Chr12 | 11023826 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g18990 |
| SBS | Chr12 | 15879852 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 8189728 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 8362675 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 12550116 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g21140 |
| SBS | Chr2 | 475052 | C-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 3205959 | T-C | HET | INTRON | |
| SBS | Chr4 | 16419312 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 23665718 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g39710 |
| SBS | Chr4 | 25903442 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 16446108 | C-T | HOMO | INTRON | |
| SBS | Chr5 | 5533905 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 5533906 | A-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 7728112 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 10079213 | A-T | HET | INTERGENIC | |
| SBS | Chr6 | 14631535 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 16917794 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 12817505 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g22720 |
| SBS | Chr7 | 14781917 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 20743983 | T-C | HET | INTRON | |
| SBS | Chr7 | 4512643 | G-A | HOMO | INTRON | |
| SBS | Chr7 | 6543809 | A-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 20045236 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 5604104 | A-C | HET | INTRON | |
| SBS | Chr9 | 1198291 | C-G | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 203151 | 203153 | 2 | |
| Deletion | Chr6 | 4332067 | 4332068 | 1 | |
| Deletion | Chr8 | 4865056 | 4865058 | 2 | |
| Deletion | Chr10 | 6206861 | 6206879 | 18 | |
| Deletion | Chr5 | 6457681 | 6457708 | 27 | |
| Deletion | Chr5 | 6602853 | 6602854 | 1 | |
| Deletion | Chr12 | 6755925 | 6755934 | 9 | LOC_Os12g12290 |
| Deletion | Chr9 | 8361245 | 8361248 | 3 | |
| Deletion | Chr6 | 11618042 | 11618043 | 1 | |
| Deletion | Chr9 | 13939342 | 13939343 | 1 | |
| Deletion | Chr10 | 16061097 | 16061098 | 1 | |
| Deletion | Chr4 | 16960100 | 16960128 | 28 | |
| Deletion | Chr2 | 21432339 | 21432343 | 4 | LOC_Os02g35640 |
| Deletion | Chr12 | 23828452 | 23828458 | 6 | |
| Deletion | Chr7 | 24144354 | 24144355 | 1 | |
| Deletion | Chr12 | 25047539 | 25047540 | 1 | LOC_Os12g40480 |
| Deletion | Chr3 | 35359523 | 35359531 | 8 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 19317487 | 19317487 | 1 | |
| Insertion | Chr3 | 28795290 | 28795291 | 2 | |
| Insertion | Chr6 | 757255 | 757256 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 9516393 | 9907330 | LOC_Os07g16850 |
| Inversion | Chr7 | 9516408 | 9907334 | LOC_Os07g16850 |
No Translocation