Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN-89 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-89 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 4922994 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 5457133 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 6144718 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 10767908 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 5583683 | A-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 1432691 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 20404018 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 799130 | T-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 14702385 | A-G | HOMO | INTRON | |
| SBS | Chr2 | 19836953 | T-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 23645194 | C-G | HOMO | INTRON | |
| SBS | Chr2 | 26439742 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 416977 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g01740 |
| SBS | Chr2 | 8846598 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 26204470 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g46330 |
| SBS | Chr4 | 27891391 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 25290867 | T-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 27897492 | G-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 20128985 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 20805569 | A-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 25497657 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 26081753 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 26849852 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr8 | 15928194 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 19112087 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 5479491 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 15980170 | A-G | HOMO | INTERGENIC |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 212684 | 212695 | 11 | |
| Deletion | Chr6 | 1617404 | 1617405 | 1 | |
| Deletion | Chr4 | 6271284 | 6271286 | 2 | |
| Deletion | Chr1 | 6404211 | 6404212 | 1 | |
| Deletion | Chr2 | 8866903 | 8866904 | 1 | LOC_Os02g15730 |
| Deletion | Chr2 | 8938998 | 8938999 | 1 | |
| Deletion | Chr12 | 9242647 | 9242648 | 1 | |
| Deletion | Chr2 | 9997001 | 10003000 | 6000 | 2 |
| Deletion | Chr2 | 23010366 | 23010367 | 1 | |
| Deletion | Chr10 | 23189479 | 23189488 | 9 | LOC_Os10g43040 |
| Deletion | Chr2 | 23791550 | 23791565 | 15 | |
| Deletion | Chr3 | 25982001 | 26028000 | 46000 | 6 |
| Deletion | Chr2 | 29289519 | 29289539 | 20 | LOC_Os02g47880 |
No Insertion
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 31433487 | 31508170 |
No Translocation