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Mutant Information

Mutant Name	FN-91 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-91 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr11	21247051	T-A	HOMO	INTERGENIC
SBS	Chr12	11468824	T-G	HOMO	UTR_3_PRIME
SBS	Chr12	20292781	T-C	HOMO	INTERGENIC
SBS	Chr3	10781489	A-G	HET	INTERGENIC
SBS	Chr3	3849549	G-A	HET	INTERGENIC
SBS	Chr4	19261660	G-A	HET	INTERGENIC
SBS	Chr4	26353955	T-C	HOMO	INTERGENIC
SBS	Chr4	3116779	C-T	HOMO	STOP_GAINED	LOC_Os04g06010
SBS	Chr5	13052314	T-C	HET	INTERGENIC
SBS	Chr5	26240783	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g45210
SBS	Chr5	26240786	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g45210
SBS	Chr6	6968587	G-A	HOMO	INTERGENIC
SBS	Chr7	29610199	G-A	HOMO	INTERGENIC
SBS	Chr7	6422349	G-A	HET	INTERGENIC
SBS	Chr8	2443498	T-G	HET	INTERGENIC
SBS	Chr8	5081786	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08760

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	55053	55054	1
Deletion	Chr11	1463001	1573000	110000	21
Deletion	Chr4	5045346	5045352	6
Deletion	Chr12	7192001	7236000	44000	5
Deletion	Chr5	14709127	14709129	2
Deletion	Chr9	16116159	16116161	2
Deletion	Chr6	16648051	16648063	12
Deletion	Chr10	18704416	18704419	3	LOC_Os10g35060

No Insertion

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6983454	6987182

No Translocation