Search Results
Mutant Information |
---|
Mutant Name | FN-91 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN-91 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 16
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr3 | 3849549 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 10781489 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 3116779 | C-T | HOMO | STOP_GAINED | LOC_Os04g06010 |
SBS | Chr4 | 19261660 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 26353955 | T-C | HOMO | INTERGENIC | |
SBS | Chr5 | 13052314 | T-C | HET | INTERGENIC | |
SBS | Chr5 | 26240783 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g45210 |
SBS | Chr5 | 26240786 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g45210 |
SBS | Chr6 | 6968587 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 6422349 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 29610199 | G-A | HOMO | INTERGENIC | |
SBS | Chr8 | 2443498 | T-G | HET | INTERGENIC | |
SBS | Chr8 | 5081786 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g08760 |
SBS | Chr11 | 21247051 | T-A | HOMO | INTERGENIC | |
SBS | Chr12 | 11468824 | T-G | HOMO | UTR_3_PRIME | |
SBS | Chr12 | 20292781 | T-C | HOMO | INTERGENIC |
Deletions: 8
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 55053 | 55054 | 1 | |
Deletion | Chr11 | 1463001 | 1573000 | 110000 | 21 |
Deletion | Chr4 | 5045346 | 5045352 | 6 | |
Deletion | Chr12 | 7192001 | 7236000 | 44000 | 5 |
Deletion | Chr5 | 14709127 | 14709129 | 2 | |
Deletion | Chr9 | 16116159 | 16116161 | 2 | |
Deletion | Chr6 | 16648051 | 16648063 | 12 | |
Deletion | Chr10 | 18704416 | 18704419 | 3 | LOC_Os10g35060 |
No Insertion
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 6983454 | 6987182 |
No Translocation