Search Results
| Mutant Information |
|---|
| Mutant Name | FN-92 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-92 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 9408457 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 9800211 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 12242074 | G-C | HET | INTRON | |
| SBS | Chr1 | 33711695 | G-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 35662165 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g61640 |
| SBS | Chr1 | 42161736 | G-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 42161737 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 8879626 | T-C | HOMO | INTRON | |
| SBS | Chr3 | 2737638 | C-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 5024961 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 5442487 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g10650 |
| SBS | Chr4 | 19273959 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 27071869 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 29167214 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 30233198 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 34568658 | G-A | HET | INTRON | |
| SBS | Chr5 | 22158424 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g37820 |
| SBS | Chr6 | 3717452 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 6506347 | C-T | HET | INTRON | |
| SBS | Chr6 | 9715275 | T-G | HET | UTR_3_PRIME | |
| SBS | Chr6 | 11728248 | T-A | HET | INTRON | |
| SBS | Chr6 | 11728249 | T-A | HET | INTRON | |
| SBS | Chr7 | 29503794 | A-T | HET | INTRON | |
| SBS | Chr8 | 6696487 | C-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 7275862 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g12350 |
| SBS | Chr9 | 9777051 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 944982 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 11342721 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 13285036 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 20922135 | C-G | HET | INTERGENIC |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1302193 | 1302199 | 6 | LOC_Os05g03210 |
| Deletion | Chr8 | 2589001 | 2802000 | 213000 | 28 |
| Deletion | Chr1 | 10418001 | 10474000 | 56000 | 6 |
| Deletion | Chr6 | 10460888 | 10460897 | 9 | |
| Deletion | Chr7 | 17132001 | 17184000 | 52000 | 5 |
| Deletion | Chr7 | 17698618 | 17698621 | 3 | LOC_Os07g30030 |
| Deletion | Chr1 | 29311406 | 29311408 | 2 | LOC_Os01g51010 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 4356947 | 4701580 | LOC_Os11g08870 |
| Inversion | Chr6 | 23141560 | 23158156 | LOC_Os06g39010 |
| Inversion | Chr8 | 27490218 | 27807626 | LOC_Os08g44170 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 16554214 | Chr1 | 13458412 | LOC_Os06g29050 |
| Translocation | Chr6 | 16556649 | Chr1 | 13458334 | LOC_Os06g29050 |