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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11510068	C-T	HET	INTERGENIC
SBS	Chr1	13818533	C-A	HOMO	INTERGENIC
SBS	Chr1	28262377	A-C	HOMO	INTRON
SBS	Chr1	36552501	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63080
SBS	Chr10	14522097	T-G	HET	INTERGENIC
SBS	Chr10	5218310	T-A	HET	INTERGENIC
SBS	Chr10	8330765	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16720
SBS	Chr11	14308436	C-A	HET	INTRON
SBS	Chr11	1804713	G-A	HET	INTERGENIC
SBS	Chr12	10273956	A-G	HOMO	INTERGENIC
SBS	Chr12	20103191	T-C	HET	UTR_3_PRIME
SBS	Chr2	3181911	G-A	HET	INTRON
SBS	Chr2	5708137	A-G	HOMO	INTRON
SBS	Chr3	1038411	G-A	HET	INTERGENIC
SBS	Chr3	10524744	C-T	HET	INTERGENIC
SBS	Chr3	11490073	A-T	HET	INTERGENIC
SBS	Chr3	32346146	T-A	HOMO	INTERGENIC
SBS	Chr4	2056721	G-A	HET	INTERGENIC
SBS	Chr4	214370	C-T	HET	INTERGENIC
SBS	Chr4	214371	C-T	HET	INTERGENIC
SBS	Chr4	26481919	T-C	HOMO	INTERGENIC
SBS	Chr4	26869602	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g45420
SBS	Chr4	452834	A-T	HET	INTERGENIC
SBS	Chr5	12140692	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20710
SBS	Chr5	13191325	C-A	HET	INTERGENIC
SBS	Chr5	15495404	G-A	HET	INTRON
SBS	Chr5	19288184	G-A	HET	INTRON
SBS	Chr5	26333603	T-C	HOMO	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	14493728	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g24680
SBS	Chr6	21282764	C-T	HOMO	INTERGENIC
SBS	Chr6	4728958	G-A	HOMO	INTERGENIC
SBS	Chr7	18912067	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g31830
SBS	Chr7	23060607	C-T	HET	INTERGENIC
SBS	Chr9	19971837	A-T	HET	INTRON

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	4084394	4084395	1
Deletion	Chr12	4783545	4783548	3
Deletion	Chr2	5709276	5709279	3
Deletion	Chr9	7102120	7102124	4
Deletion	Chr12	8797140	8797142	2	LOC_Os12g15400
Deletion	Chr9	9124677	9124695	18
Deletion	Chr4	11447475	11447482	7
Deletion	Chr6	12532622	12532623	1
Deletion	Chr11	14516047	14516053	6	LOC_Os11g25454
Deletion	Chr3	17555949	17555953	4
Deletion	Chr5	17650658	17650659	1
Deletion	Chr3	18300812	18305310	4498	LOC_Os03g32000
Deletion	Chr5	19389131	19389132	1
Deletion	Chr10	21092001	21232000	140000	22
Deletion	Chr6	23962230	23962257	27
Deletion	Chr7	25278106	25278115	9	LOC_Os07g42234
Deletion	Chr11	27649832	27649835	3	LOC_Os11g45710
Deletion	Chr4	32059032	32059038	6
Deletion	Chr2	34708648	34708651	3
Deletion	Chr1	41708643	41708652	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	1883390	1883390	1
Insertion	Chr5	6877347	6877350	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6146882	19530273
Inversion	Chr3	33506785	35025452

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	6141650	Chr2	29503039	LOC_Os02g48190
Translocation	Chr10	13145226	Chr2	3162889

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr2	2477028	3834589	1357561	229

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