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| Mutant Information |
|---|
| Mutant Name | FN1000-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1000-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21699695 | C-A | HET | INTRON | |
| SBS | Chr1 | 27295156 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 5922143 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr12 | 14504630 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 24288326 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 14378580 | A-T | HET | INTRON | |
| SBS | Chr2 | 25065686 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 27143392 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 3056583 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 35514365 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 15584651 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 28595764 | T-C | HET | INTERGENIC | |
| SBS | Chr5 | 11988951 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g20430 |
| SBS | Chr5 | 13153224 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 14458587 | T-G | HET | INTRON | |
| SBS | Chr6 | 20229434 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 25758494 | C-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 17379175 | A-C | HET | INTERGENIC | |
| SBS | Chr7 | 2458484 | T-G | HOMO | UTR_3_PRIME | |
| SBS | Chr7 | 27722924 | T-A | HET | INTERGENIC | |
| SBS | Chr7 | 9492681 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 9676857 | G-T | HET | INTERGENIC |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1106561 | 1106570 | 9 | |
| Deletion | Chr5 | 2030681 | 2030690 | 9 | |
| Deletion | Chr2 | 2761207 | 2761211 | 4 | LOC_Os02g05650 |
| Deletion | Chr2 | 5750802 | 5750836 | 34 | LOC_Os02g10840 |
| Deletion | Chr2 | 7282031 | 7282038 | 7 | |
| Deletion | Chr3 | 9293518 | 9293525 | 7 | |
| Deletion | Chr10 | 9659272 | 9659273 | 1 | |
| Deletion | Chr4 | 10798595 | 10798596 | 1 | |
| Deletion | Chr2 | 14141582 | 14141586 | 4 | |
| Deletion | Chr7 | 14797665 | 14797672 | 7 | |
| Deletion | Chr7 | 14869889 | 14869918 | 29 | LOC_Os07g25900 |
| Deletion | Chr11 | 15184768 | 15184773 | 5 | |
| Deletion | Chr7 | 15975650 | 15975651 | 1 | LOC_Os07g27420 |
| Deletion | Chr2 | 19950041 | 19950042 | 1 | |
| Deletion | Chr1 | 22205878 | 22205882 | 4 | |
| Deletion | Chr1 | 27965082 | 27965099 | 17 | LOC_Os01g48760 |
| Deletion | Chr4 | 28528838 | 28528845 | 7 | |
| Deletion | Chr3 | 31151066 | 31151074 | 8 | LOC_Os03g54790 |
| Deletion | Chr3 | 35206950 | 35206951 | 1 | |
| Deletion | Chr1 | 38183755 | 38183804 | 49 | |
| Deletion | Chr1 | 39067176 | 39067182 | 6 | LOC_Os01g67310 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 12624598 | 12624600 | 3 | |
| Insertion | Chr3 | 31100647 | 31100648 | 2 | |
| Insertion | Chr7 | 25230591 | 25230599 | 9 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 8164721 | 8965756 | LOC_Os12g14330 |
| Inversion | Chr12 | 8164734 | 8966905 | 2 |
No Translocation