Search Results
| Mutant Information |
|---|
| Mutant Name | FN1001-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1001-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7568839 | C-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 19178589 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr1 | 23047003 | T-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 29725764 | A-C | HET | INTERGENIC | |
| SBS | Chr1 | 40221326 | G-C | HET | INTRON | |
| SBS | Chr2 | 26770392 | C-T | HOMO | INTRON | |
| SBS | Chr3 | 4314451 | T-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 6156110 | T-G | HET | INTRON | |
| SBS | Chr5 | 16646634 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g28430 |
| SBS | Chr6 | 3033883 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 10772157 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g18950 |
| SBS | Chr7 | 13330025 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 20922143 | C-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 7144777 | A-T | HET | INTRON | |
| SBS | Chr8 | 9573872 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 9723469 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 11859870 | T-A | HET | STOP_GAINED | LOC_Os08g19820 |
| SBS | Chr8 | 26481141 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 2393314 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 13197406 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 13704891 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 20290920 | C-G | HET | INTERGENIC |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 3863901 | 3863904 | 3 | |
| Deletion | Chr3 | 5401750 | 5401756 | 6 | |
| Deletion | Chr2 | 16429151 | 16429155 | 4 | |
| Deletion | Chr10 | 20711293 | 20711325 | 32 | |
| Deletion | Chr1 | 20855378 | 20855386 | 8 | LOC_Os01g37350 |
| Deletion | Chr1 | 23153136 | 23153175 | 39 | LOC_Os01g40930 |
| Deletion | Chr11 | 24241474 | 24241475 | 1 | |
| Deletion | Chr1 | 24548075 | 24548088 | 13 | |
| Deletion | Chr8 | 27349906 | 27349917 | 11 | |
| Deletion | Chr4 | 28241256 | 28241264 | 8 | |
| Deletion | Chr1 | 35401909 | 35401910 | 1 | |
| Deletion | Chr1 | 35473927 | 35473928 | 1 | LOC_Os01g61310 |
| Deletion | Chr1 | 36991263 | 36991264 | 1 | |
| Deletion | Chr1 | 37281366 | 37281367 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr8 | 3532446 | 3532447 | 2 | |
| Insertion | Chr7 | 11088367 | 11088370 | 4 | |
| Insertion | Chr3 | 13576942 | 13576942 | 1 | LOC_Os03g23935 |
Inversions: 8
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 5815395 | 5985386 | 2 |
| Inversion | Chr8 | 5954098 | 5983699 | 2 |
| Inversion | Chr10 | 6833673 | 9734745 | 2 |
| Inversion | Chr4 | 15179450 | 15450856 | |
| Inversion | Chr1 | 19867608 | 19880094 | |
| Inversion | Chr11 | 26142399 | 26707976 | LOC_Os11g43320 |
| Inversion | Chr11 | 26142423 | 26707974 | LOC_Os11g43320 |
| Inversion | Chr1 | 34415702 | 35300300 | LOC_Os01g59510 |
No Translocation