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| Mutant Information |
|---|
| Mutant Name | FN1002-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1002-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 17
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 3308080 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 11815042 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 175621 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 22656871 | T-C | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 6777114 | A-G | HOMO | INTRON | |
| SBS | Chr2 | 26482112 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 26568977 | A-G | HET | INTRON | |
| SBS | Chr2 | 30601023 | T-G | HET | INTERGENIC | |
| SBS | Chr2 | 32821501 | G-C | HET | INTERGENIC | |
| SBS | Chr4 | 10507498 | T-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 12241182 | C-G | HOMO | INTRON | |
| SBS | Chr5 | 16887630 | C-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 28480857 | T-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 4905207 | C-T | HOMO | INTRON | |
| SBS | Chr6 | 8984675 | G-C | HET | INTERGENIC | |
| SBS | Chr7 | 28157500 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 19839127 | A-C | HOMO | INTERGENIC |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 96334 | 96335 | 1 | LOC_Os10g01100 |
| Deletion | Chr4 | 1052818 | 1052824 | 6 | |
| Deletion | Chr1 | 2282416 | 2282419 | 3 | LOC_Os01g04930 |
| Deletion | Chr3 | 6253103 | 6253108 | 5 | |
| Deletion | Chr3 | 6441921 | 6441960 | 39 | |
| Deletion | Chr8 | 7964319 | 7964320 | 1 | LOC_Os08g13390 |
| Deletion | Chr4 | 11029192 | 11029193 | 1 | |
| Deletion | Chr4 | 11382115 | 11382116 | 1 | LOC_Os04g20340 |
| Deletion | Chr1 | 16059586 | 16059587 | 1 | |
| Deletion | Chr1 | 17098007 | 17098008 | 1 | |
| Deletion | Chr6 | 17681001 | 17703000 | 22000 | 4 |
| Deletion | Chr7 | 18957607 | 18957608 | 1 | LOC_Os07g31884 |
| Deletion | Chr3 | 20193313 | 20193314 | 1 | |
| Deletion | Chr7 | 20477801 | 20477807 | 6 | |
| Deletion | Chr9 | 21539584 | 21539598 | 14 | LOC_Os09g37280 |
| Deletion | Chr1 | 25311001 | 25356000 | 45000 | 7 |
| Deletion | Chr2 | 25365089 | 25365099 | 10 | LOC_Os02g42170 |
| Deletion | Chr5 | 25843749 | 25843756 | 7 | |
| Deletion | Chr7 | 27126412 | 27126414 | 2 | |
| Deletion | Chr6 | 28189583 | 28189591 | 8 | LOC_Os06g46440 |
| Deletion | Chr3 | 30540291 | 30540308 | 17 | |
| Deletion | Chr1 | 31405272 | 31405366 | 94 | |
| Deletion | Chr4 | 34219050 | 34219053 | 3 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 5697266 | 6216424 | LOC_Os10g10360 |
| Inversion | Chr10 | 5697585 | 6216423 | LOC_Os10g10360 |
| Inversion | Chr1 | 17089102 | 17098528 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5172027 | Chr1 | 17099319 | |
| Translocation | Chr10 | 5697581 | Chr8 | 526533 | LOC_Os10g10360 |
| Translocation | Chr10 | 5769197 | Chr2 | 30637211 | LOC_Os02g50150 |
| Translocation | Chr10 | 5769203 | Chr2 | 30581870 | |
| Translocation | Chr8 | 14222682 | Chr6 | 14069881 | |
| Translocation | Chr11 | 17490452 | Chr4 | 7080232 | |
| Translocation | Chr6 | 17698855 | Chr1 | 3721743 | 2 |
| Translocation | Chr7 | 22069281 | Chr6 | 25276921 | LOC_Os07g36830 |
| Translocation | Chr11 | 23003238 | Chr5 | 1787442 | LOC_Os05g03972 |