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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19042002	A-G	HET	INTERGENIC
SBS	Chr1	19887415	C-T	HET	INTERGENIC
SBS	Chr1	22335390	A-T	HOMO	INTERGENIC
SBS	Chr2	25512902	C-T	HOMO	UTR_5_PRIME
SBS	Chr3	4623828	T-G	HOMO	INTERGENIC
SBS	Chr3	27675728	C-T	HOMO	INTERGENIC
SBS	Chr4	5659153	C-T	HET	INTRON
SBS	Chr4	5660967	T-A	HET	INTRON
SBS	Chr4	9879894	G-C	HET	INTERGENIC
SBS	Chr4	11958839	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	12865207	G-A	HET	INTRON
SBS	Chr4	13972095	T-A	HET	INTERGENIC
SBS	Chr4	16363567	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr5	13984440	C-T	HET	INTERGENIC
SBS	Chr5	22241578	G-C	HET	UTR_5_PRIME
SBS	Chr6	11062897	A-T	HOMO	INTERGENIC
SBS	Chr6	16253122	A-C	HOMO	INTERGENIC
SBS	Chr6	28544255	C-T	HET	INTERGENIC
SBS	Chr7	456654	G-A	HOMO	INTRON
SBS	Chr7	6973273	A-T	HET	INTERGENIC
SBS	Chr7	12430411	G-T	HET	INTRON
SBS	Chr7	12430412	C-T	HET	INTRON
SBS	Chr8	24435829	C-A	HOMO	INTERGENIC
SBS	Chr8	24687388	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g39080
SBS	Chr8	24986558	G-T	HET	INTRON
SBS	Chr8	26312058	T-C	HET	INTERGENIC
SBS	Chr10	9318871	G-A	HET	INTERGENIC
SBS	Chr10	20926129	C-T	HOMO	INTERGENIC
SBS	Chr11	14897044	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g26040
SBS	Chr11	15739419	G-A	HOMO	INTERGENIC
SBS	Chr12	2541961	G-A	HOMO	INTERGENIC
SBS	Chr12	2541962	C-A	HOMO	INTERGENIC
SBS	Chr12	3144120	T-C	HOMO	INTERGENIC
SBS	Chr12	19225242	C-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	68314	68323	9
Deletion	Chr6	3698914	3698915	1
Deletion	Chr9	5855588	5855589	1
Deletion	Chr12	6616414	6616423	9
Deletion	Chr7	7269498	7269505	7
Deletion	Chr10	7345907	7345913	6
Deletion	Chr5	8153315	8153320	5
Deletion	Chr4	8757214	8757216	2
Deletion	Chr7	9574877	9574878	1
Deletion	Chr3	12935273	12935275	2
Deletion	Chr1	16069001	16102000	33000	6
Deletion	Chr1	16118262	16118278	16
Deletion	Chr1	16160001	16183000	23000	LOC_Os01g28870
Deletion	Chr7	17189874	17189876	2
Deletion	Chr8	17818846	17818851	5
Deletion	Chr12	19906942	19906943	1
Deletion	Chr11	20132310	20132311	1
Deletion	Chr12	21767396	21767398	2
Deletion	Chr12	23165386	23165403	17	LOC_Os12g37730
Deletion	Chr8	23800001	23935000	135000	23
Deletion	Chr3	25096303	25096304	1
Deletion	Chr1	26533182	26533187	5	LOC_Os01g46610
Deletion	Chr1	30195756	30195767	11
Deletion	Chr1	30522415	30522416	1
Deletion	Chr1	37329225	37329239	14

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	2549378	2549399	22
Insertion	Chr12	5714279	5714282	4
Insertion	Chr2	7763376	7763377	2
Insertion	Chr8	10173562	10173563	2
Insertion	Chr10	17897390	17897390	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2714971	7189884
Inversion	Chr7	2714983	7189900
Inversion	Chr4	5478138	5784515
Inversion	Chr1	15146100	16233444	2
Inversion	Chr1	16068538	17728979
Inversion	Chr1	16101822	16739779	LOC_Os01g29880
Inversion	Chr1	16159637	16336400
Inversion	Chr1	18989933	19036913

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	27311168	Chr4	20036778

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