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Mutant Information

Mutant Name	FN1007-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1007-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10543322	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18690
SBS	Chr1	34383224	A-T	HET	INTERGENIC
SBS	Chr10	22755360	G-T	HET	INTRON
SBS	Chr3	17965008	A-G	HET	INTERGENIC
SBS	Chr4	15535934	C-G	HOMO	INTRON
SBS	Chr4	3143018	T-C	HOMO	INTERGENIC
SBS	Chr4	8924872	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g16420
SBS	Chr5	10315381	G-A	HET	INTERGENIC
SBS	Chr5	1171173	T-G	HET	INTERGENIC
SBS	Chr5	14345624	C-T	HET	INTERGENIC
SBS	Chr7	8079243	T-A	HET	STOP_GAINED	LOC_Os07g14160
SBS	Chr8	31426	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01040
SBS	Chr9	11086610	G-T	HET	INTERGENIC
SBS	Chr9	19000976	C-A	HET	INTERGENIC
SBS	Chr9	19608513	T-A	HET	INTERGENIC
SBS	Chr9	8439457	G-C	HET	INTRON
SBS	Chr9	8992571	T-C	HET	INTERGENIC

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1999888	2000059	171	LOC_Os05g04370
Deletion	Chr1	3575777	3575784	7
Deletion	Chr9	12022468	12022479	11	LOC_Os09g20060
Deletion	Chr5	13677676	13677678	2
Deletion	Chr10	13895448	13895449	1
Deletion	Chr8	19815069	19815070	1
Deletion	Chr8	25048775	25048784	9
Deletion	Chr2	28809613	28809620	7
Deletion	Chr1	35612872	35612875	3	LOC_Os01g61580

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	20700249	20700249	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	23663336	Chr5	6870533