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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21507663	T-A	HET	INTRON
SBS	Chr1	418585	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	18124939	C-T	HOMO	INTERGENIC
SBS	Chr10	20627339	C-A	HOMO	INTERGENIC
SBS	Chr12	14104860	G-A	HET	INTERGENIC
SBS	Chr12	16289819	C-A	HET	INTERGENIC
SBS	Chr12	1720970	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04110
SBS	Chr12	688048	A-C	HET	INTERGENIC
SBS	Chr12	9936424	T-A	HET	INTERGENIC
SBS	Chr2	11124936	G-A	HET	INTERGENIC
SBS	Chr3	12488378	C-T	HET	INTERGENIC
SBS	Chr3	17184770	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30110
SBS	Chr3	26950485	A-C	HOMO	INTERGENIC
SBS	Chr4	10222230	C-T	HET	INTERGENIC
SBS	Chr4	12757688	T-A	HET	INTERGENIC
SBS	Chr4	188492	A-T	HET	INTRON
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	27200736	T-C	HET	INTERGENIC
SBS	Chr6	19692188	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g33860
SBS	Chr7	12946911	T-G	HOMO	INTRON
SBS	Chr8	11493647	G-C	HET	INTERGENIC
SBS	Chr8	19566365	G-A	HET	INTERGENIC
SBS	Chr8	3426648	T-C	HOMO	INTRON
SBS	Chr8	6708508	T-C	HET	INTRON
SBS	Chr9	13796478	T-C	HOMO	INTRON
SBS	Chr9	20303462	G-A	HET	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2828356	2828368	12
Deletion	Chr7	2968665	2968674	9
Deletion	Chr1	4682829	4682870	41	LOC_Os01g09246
Deletion	Chr9	6658819	6658820	1
Deletion	Chr12	9039001	9930000	891000	143
Deletion	Chr8	9630811	9630814	3	LOC_Os08g15840
Deletion	Chr1	10612127	10612130	3
Deletion	Chr4	11344618	11344633	15
Deletion	Chr4	11353710	11353715	5
Deletion	Chr5	14299879	14300197	318	LOC_Os05g24684
Deletion	Chr3	14649792	14649794	2
Deletion	Chr1	14703473	14703487	14	LOC_Os01g25920
Deletion	Chr6	16723376	16723379	3	LOC_Os06g29300
Deletion	Chr10	19402486	19402490	4
Deletion	Chr10	19927285	19927294	9
Deletion	Chr9	21336146	21336151	5
Deletion	Chr8	23076001	23140000	64000	12
Deletion	Chr8	23144839	23144840	1
Deletion	Chr5	24180158	24180159	1
Deletion	Chr4	30778021	30778026	5
Deletion	Chr3	35032123	35032125	2
Deletion	Chr1	39197105	39197112	7

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	4636827	4636840	14
Insertion	Chr1	4876397	4876399	3
Insertion	Chr1	8938808	8938810	3
Insertion	Chr5	20563410	20563410	1
Insertion	Chr5	24490015	24490016	2
Insertion	Chr7	6098389	6098389	1
Insertion	Chr8	24958406	24958406	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14449627	14450376

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8085174	Chr5	14299902	LOC_Os05g24684
Translocation	Chr12	11274026	Chr2	15004497	LOC_Os12g19381
Translocation	Chr4	12174192	Chr3	34122475
Translocation	Chr6	17073742	Chr4	12175869	LOC_Os04g21530
Translocation	Chr6	17073744	Chr4	12174745
Translocation	Chr11	19832382	Chr8	15705113
Translocation	Chr11	29015513	Chr7	14923818
Translocation	Chr3	34122434	Chr1	2021300

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