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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18273899	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	28414298	G-A	HET	INTERGENIC
SBS	Chr1	28414299	T-G	HET	INTERGENIC
SBS	Chr1	28414302	A-G	HET	INTERGENIC
SBS	Chr1	31566848	C-T	HET	INTERGENIC
SBS	Chr1	36414607	G-A	HET	UTR_3_PRIME
SBS	Chr1	37295042	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g64220
SBS	Chr1	41124404	A-G	HET	INTERGENIC
SBS	Chr10	1823737	C-T	HET	INTERGENIC
SBS	Chr11	17095490	G-T	HET	INTERGENIC
SBS	Chr11	21099731	A-C	HET	INTRON
SBS	Chr11	22806061	T-C	HET	INTERGENIC
SBS	Chr11	26178700	T-C	HET	INTERGENIC
SBS	Chr12	2333492	A-G	HET	INTERGENIC
SBS	Chr2	14430870	A-G	HET	INTERGENIC
SBS	Chr2	19051441	G-A	HET	INTERGENIC
SBS	Chr2	24099934	C-T	HOMO	INTERGENIC
SBS	Chr2	2855123	T-C	HOMO	INTERGENIC
SBS	Chr3	10093020	C-A	HET	INTRON
SBS	Chr3	19508008	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g34270
SBS	Chr3	19508009	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g34270
SBS	Chr3	257974	G-A	HET	INTERGENIC
SBS	Chr3	257975	C-T	HET	INTERGENIC
SBS	Chr5	6438104	T-A	HET	INTRON
SBS	Chr6	16816900	A-G	HET	INTERGENIC
SBS	Chr6	20158095	T-G	HET	INTERGENIC
SBS	Chr6	27206777	G-T	HET	INTERGENIC
SBS	Chr6	27363484	T-G	HET	INTERGENIC
SBS	Chr7	16458710	T-A	HET	INTERGENIC
SBS	Chr8	15915599	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g26160
SBS	Chr9	11877286	T-C	HET	INTERGENIC
SBS	Chr9	12022543	T-C	HET	SYNONYMOUS_CODING

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	2182298	2182435	137
Deletion	Chr2	2321164	2321165	1	LOC_Os02g04950
Deletion	Chr8	3793765	3793771	6	LOC_Os08g06800
Deletion	Chr3	5996541	5996547	6
Deletion	Chr5	8928669	8928672	3
Deletion	Chr9	9068247	9068277	30	LOC_Os09g15030
Deletion	Chr8	9193389	9193404	15
Deletion	Chr2	12431001	12449000	18000	LOC_Os02g21009
Deletion	Chr9	12589423	12589440	17	LOC_Os09g20910
Deletion	Chr5	16209155	16209156	1
Deletion	Chr8	21199224	21199226	2	LOC_Os08g33860
Deletion	Chr12	23467818	23467822	4
Deletion	Chr11	23615106	23615111	5	LOC_Os11g39650
Deletion	Chr7	23868064	23868073	9
Deletion	Chr1	25627280	25627295	15	LOC_Os01g45160
Deletion	Chr7	27500144	27500150	6
Deletion	Chr1	28186722	28186757	35
Deletion	Chr6	29585347	29586992	1645
Deletion	Chr1	33769682	33769707	25
Deletion	Chr1	36567001	36581000	14000	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	29433436	29433445	10
Insertion	Chr3	24967324	24967325	2
Insertion	Chr7	11740182	11740183	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11201962	12430983	LOC_Os02g19210

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6993248	Chr3	22046065
Translocation	Chr7	7351923	Chr2	11201969	LOC_Os02g19210
Translocation	Chr8	10754436	Chr6	19260584	LOC_Os08g17580
Translocation	Chr9	15056238	Chr7	1989818
Translocation	Chr4	16244168	Chr1	36566484	LOC_Os01g63100
Translocation	Chr9	22082503	Chr7	7349460	LOC_Os07g12830
Translocation	Chr9	22082545	Chr6	29585382
Translocation	Chr12	25663594	Chr1	29500057
Translocation	Chr6	29586963	Chr2	12449279	LOC_Os02g21009

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