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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11503172	C-T	HOMO	INTERGENIC
SBS	Chr1	15923518	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g28420
SBS	Chr1	521630	T-A	HET	INTRON
SBS	Chr10	11429308	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22130
SBS	Chr10	11709474	A-C	HET	INTRON
SBS	Chr10	16751302	T-C	HOMO	INTRON
SBS	Chr10	23089656	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g42820
SBS	Chr11	24237317	T-A	HET	INTERGENIC
SBS	Chr11	26316988	G-A	HET	INTERGENIC
SBS	Chr11	5964888	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g10820
SBS	Chr12	21096316	T-C	HET	SYNONYMOUS_CODING
SBS	Chr12	23269661	C-T	HET	INTRON
SBS	Chr12	23269662	G-T	HET	INTRON
SBS	Chr12	26589654	C-A	HET	INTERGENIC
SBS	Chr2	12011970	C-T	HET	INTRON
SBS	Chr2	21012830	G-T	HET	INTERGENIC
SBS	Chr2	9473480	A-T	HET	INTERGENIC
SBS	Chr3	12333606	G-A	HET	INTERGENIC
SBS	Chr3	13542021	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23860
SBS	Chr3	17366868	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g30450
SBS	Chr3	23677737	C-T	HET	INTERGENIC
SBS	Chr3	26937352	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g47590
SBS	Chr4	20427030	T-C	HET	UTR_3_PRIME
SBS	Chr5	3553076	T-A	HET	INTERGENIC
SBS	Chr6	29214001	T-A	HET	INTERGENIC
SBS	Chr6	30143421	T-C	HET	INTERGENIC
SBS	Chr7	12609176	A-T	HET	INTRON
SBS	Chr7	5217456	A-C	HET	INTERGENIC
SBS	Chr7	7469308	T-C	HET	INTERGENIC
SBS	Chr8	14882864	C-G	HET	INTERGENIC
SBS	Chr8	270186	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01410
SBS	Chr9	13586449	C-T	HET	INTRON
SBS	Chr9	13786841	C-T	HET	INTERGENIC

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2931090	2931095	5	LOC_Os07g06040
Deletion	Chr5	3708714	3708716	2	LOC_Os05g07050
Deletion	Chr11	4658313	4658314	1
Deletion	Chr5	6041918	6041921	3
Deletion	Chr3	6331001	6390000	59000	9
Deletion	Chr7	8984896	8984897	1
Deletion	Chr5	11281510	11281511	1
Deletion	Chr4	11838762	11838768	6
Deletion	Chr4	12068001	12136000	68000	8
Deletion	Chr10	12081114	12081115	1	LOC_Os10g23140
Deletion	Chr2	12131359	12131365	6
Deletion	Chr4	12209001	12260000	51000	8
Deletion	Chr4	12276001	12870000	594000	98
Deletion	Chr9	12634184	12634214	30
Deletion	Chr2	13357611	13357618	7
Deletion	Chr8	16922091	16922092	1
Deletion	Chr3	17515949	17515972	23
Deletion	Chr9	19954871	19954906	35
Deletion	Chr4	21830849	21830850	1
Deletion	Chr10	21963548	21963549	1
Deletion	Chr4	22230159	22230163	4	LOC_Os04g36820
Deletion	Chr3	24144182	24145406	1224	LOC_Os03g43309
Deletion	Chr7	24586490	24586491	1
Deletion	Chr4	24868836	24868837	1
Deletion	Chr3	34034271	34034272	1
Deletion	Chr2	35209044	35209047	3	LOC_Os02g57450
Deletion	Chr1	42821538	42821592	54	LOC_Os01g73900

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12717709	12717709	1
Insertion	Chr10	22580314	22580314	1
Insertion	Chr11	10895601	10895601	1
Insertion	Chr2	15620871	15620872	2
Insertion	Chr2	17808900	17808913	14	LOC_Os02g29960
Insertion	Chr2	18371365	18371366	2
Insertion	Chr3	32604039	32604039	1
Insertion	Chr7	1274621	1274644	24	LOC_Os07g03230

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9134393	27265402
Inversion	Chr4	12067553	12209189	LOC_Os04g21580
Inversion	Chr4	12135749	12870112
Inversion	Chr10	15749530	15990474	LOC_Os10g30700
Inversion	Chr4	20084608	20761084	LOC_Os04g33200

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	105977	Chr5	8998625	2
Translocation	Chr11	358277	Chr5	8997056	LOC_Os05g15940
Translocation	Chr5	8997053	Chr4	20760808	LOC_Os05g15940
Translocation	Chr5	8997088	Chr2	28153189	LOC_Os05g15940
Translocation	Chr5	8998595	Chr4	20761118	LOC_Os05g15940
Translocation	Chr4	12072508	Chr2	28173309
Translocation	Chr10	15749532	Chr2	28153757	LOC_Os02g46210
Translocation	Chr10	15990461	Chr3	24144186	2
Translocation	Chr11	19419471	Chr2	28171241	LOC_Os11g32870
Translocation	Chr4	20761074	Chr2	28153141

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