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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12444464	A-T	HET	INTERGENIC
SBS	Chr1	16095845	A-G	HOMO	INTERGENIC
SBS	Chr1	21018144	T-C	HET	SYNONYMOUS_CODING
SBS	Chr1	38671582	T-C	HET	INTERGENIC
SBS	Chr1	41379019	C-T	HOMO	INTERGENIC
SBS	Chr1	41687767	G-A	HOMO	INTERGENIC
SBS	Chr10	11977648	G-A	HET	INTERGENIC
SBS	Chr10	20070624	A-C	HOMO	INTERGENIC
SBS	Chr10	9450421	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	3773907	G-T	HOMO	INTERGENIC
SBS	Chr12	10237543	A-G	HET	INTRON
SBS	Chr12	13974325	A-G	HET	INTERGENIC
SBS	Chr12	14099264	C-A	HET	INTERGENIC
SBS	Chr12	17125072	T-A	HET	INTERGENIC
SBS	Chr2	14962602	G-A	HET	UTR_3_PRIME
SBS	Chr3	35256165	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g62250
SBS	Chr3	5338217	G-A	HET	INTERGENIC
SBS	Chr3	9547301	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g17164
SBS	Chr4	10549502	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18980
SBS	Chr4	25845036	C-T	HET	INTERGENIC
SBS	Chr4	9881032	G-T	HET	INTERGENIC
SBS	Chr5	10446800	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g18170
SBS	Chr5	29265875	A-G	HET	INTERGENIC
SBS	Chr5	5370435	G-T	HOMO	INTERGENIC
SBS	Chr5	5370436	C-T	HOMO	INTERGENIC
SBS	Chr6	31037671	A-G	HET	INTRON
SBS	Chr7	14816199	T-A	HET	INTERGENIC
SBS	Chr7	24214659	T-A	HET	INTERGENIC
SBS	Chr7	26478686	G-A	HET	INTERGENIC
SBS	Chr7	27381689	T-A	HET	STOP_GAINED	LOC_Os07g45890
SBS	Chr7	29526071	C-G	HET	SYNONYMOUS_CODING
SBS	Chr7	4578260	T-C	HET	INTERGENIC
SBS	Chr7	8829323	G-A	HET	INTRON
SBS	Chr8	9671920	G-A	HET	INTERGENIC
SBS	Chr9	11324131	C-T	HET	INTERGENIC
SBS	Chr9	19550956	A-C	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1296206	1296209	3
Deletion	Chr11	5979033	5979077	44
Deletion	Chr3	5984070	5984073	3	LOC_Os03g11550
Deletion	Chr7	8555057	8555062	5
Deletion	Chr1	8705141	8705146	5
Deletion	Chr6	9999173	9999176	3
Deletion	Chr7	10851001	10851010	9
Deletion	Chr9	10877001	10907000	30000	7
Deletion	Chr7	11592778	11592779	1	LOC_Os07g19560
Deletion	Chr9	11852192	11852193	1
Deletion	Chr6	17462121	17462122	1	LOC_Os06g30260
Deletion	Chr8	18690001	18705000	15000	2
Deletion	Chr9	19106399	19106941	542	LOC_Os09g32010
Deletion	Chr5	20124890	20124934	44
Deletion	Chr2	21367123	21367134	11
Deletion	Chr8	22280341	22280357	16
Deletion	Chr1	22672567	22677285	4718	LOC_Os01g40190
Deletion	Chr1	26029425	26029433	8
Deletion	Chr6	26076373	26076383	10
Deletion	Chr1	29026773	29026786	13
Deletion	Chr1	29539644	29539662	18

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	28676529	28676531	3
Insertion	Chr3	12114390	12114391	2
Insertion	Chr7	6446576	6446576	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	18122416	18690339	LOC_Os08g29560
Inversion	Chr8	18122430	18704458	LOC_Os08g29560
Inversion	Chr5	18334747	18897509	2
Inversion	Chr10	18637094	18752777	LOC_Os10g35140
Inversion	Chr11	28694608	28947547	LOC_Os11g48000

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6695869	Chr3	30668184	2
Translocation	Chr8	6695922	Chr3	30668741	2
Translocation	Chr8	9661127	Chr5	4928416
Translocation	Chr8	11689899	Chr6	17726556
Translocation	Chr12	13380065	Chr3	13641929
Translocation	Chr9	19106941	Chr1	41359779	LOC_Os09g32010

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