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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16965235	G-A	HET	INTRON
SBS	Chr1	27206905	T-A	HOMO	INTERGENIC
SBS	Chr1	41522719	A-G	HET	INTERGENIC
SBS	Chr10	14474677	C-T	HOMO	INTERGENIC
SBS	Chr10	18286881	T-A	HET	INTERGENIC
SBS	Chr10	18286882	C-G	HET	INTERGENIC
SBS	Chr10	18286883	G-C	HET	INTERGENIC
SBS	Chr10	20692777	G-A	HET	UTR_3_PRIME
SBS	Chr11	11766399	C-T	HET	INTERGENIC
SBS	Chr11	18838613	G-A	HOMO	INTERGENIC
SBS	Chr11	21305594	C-A	HET	INTERGENIC
SBS	Chr12	10595698	C-T	HOMO	INTERGENIC
SBS	Chr12	19385832	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g32140
SBS	Chr12	7763454	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	7984495	A-T	HOMO	INTERGENIC
SBS	Chr3	22270283	T-A	HET	INTERGENIC
SBS	Chr3	30157618	C-T	HOMO	INTRON
SBS	Chr4	27871534	C-T	HOMO	INTRON
SBS	Chr4	9969432	G-T	HET	INTERGENIC
SBS	Chr5	20622354	C-A	HET	INTRON
SBS	Chr5	8291094	A-G	HET	INTERGENIC
SBS	Chr7	12403177	C-T	HOMO	INTERGENIC
SBS	Chr7	17439537	G-T	HET	INTERGENIC
SBS	Chr7	25946572	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g43350
SBS	Chr7	25974917	T-C	HET	INTERGENIC
SBS	Chr7	26844200	G-A	HET	INTERGENIC
SBS	Chr8	18427974	G-T	HET	INTERGENIC
SBS	Chr8	18427975	A-G	HET	INTERGENIC
SBS	Chr8	24826593	A-T	HOMO	INTERGENIC
SBS	Chr8	24848780	C-T	HET	INTERGENIC
SBS	Chr8	27024585	A-T	HET	INTRON
SBS	Chr8	27024586	A-G	HET	INTRON
SBS	Chr8	27596037	C-T	HET	INTRON
SBS	Chr8	5085704	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08770
SBS	Chr8	7521483	A-G	HET	INTERGENIC
SBS	Chr9	12972987	C-T	HET	INTERGENIC
SBS	Chr9	14118787	G-A	HET	INTERGENIC
SBS	Chr9	14588769	T-G	HOMO	INTERGENIC
SBS	Chr9	3997712	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07860

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	617518	617527	9
Deletion	Chr12	2202219	2202221	2
Deletion	Chr5	2212063	2212067	4
Deletion	Chr2	3385198	3385226	28
Deletion	Chr12	4139613	4142256	2643
Deletion	Chr8	7329519	7329528	9
Deletion	Chr7	7977387	7977404	17
Deletion	Chr1	9587570	9589347	1777
Deletion	Chr11	9804280	9804283	3
Deletion	Chr3	11044080	11044082	2
Deletion	Chr6	12531190	12531199	9
Deletion	Chr9	13903899	13903909	10
Deletion	Chr3	17591943	17591944	1
Deletion	Chr2	19066363	19066364	1
Deletion	Chr12	19365441	19365452	11
Deletion	Chr10	19716001	19814000	98000	13
Deletion	Chr10	19822001	20449000	627000	99
Deletion	Chr10	20488001	20523000	35000	7
Deletion	Chr8	20703359	20703365	6
Deletion	Chr10	21690284	21690304	20	LOC_Os10g40510
Deletion	Chr4	26026176	26026193	17	LOC_Os04g43916
Deletion	Chr12	27307030	27307036	6	LOC_Os12g44020
Deletion	Chr1	37440833	37440838	5	LOC_Os01g64520

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4897757	4897758	2
Insertion	Chr2	1417698	1417699	2	LOC_Os02g03480
Insertion	Chr2	16468454	16468457	4	LOC_Os02g27810
Insertion	Chr4	32200739	32200740	2
Insertion	Chr5	14520416	14520417	2
Insertion	Chr5	21507922	21507922	1
Insertion	Chr6	29030687	29030690	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1163673	1503510	LOC_Os01g03040
Inversion	Chr6	13700247	14945527	LOC_Os06g23470
Inversion	Chr6	13755758	14945532

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	5994456	Chr2	15829655	2
Translocation	Chr6	8355031	Chr1	9587697
Translocation	Chr6	13700262	Chr1	9589369	LOC_Os06g23470
Translocation	Chr3	14301785	Chr2	15830744	LOC_Os02g26960
Translocation	Chr3	14301793	Chr2	15832701	LOC_Os02g26960
Translocation	Chr2	15829387	Chr1	28071434	2
Translocation	Chr2	15829650	Chr1	28071433	2
Translocation	Chr4	25020374	Chr1	1503541	LOC_Os04g42290
Translocation	Chr4	25045355	Chr1	1163669	2

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