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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13145221	G-A	HOMO	START_LOST	LOC_Os01g23390
SBS	Chr1	19145055	G-T	HET	INTRON
SBS	Chr1	27100579	G-A	HOMO	INTERGENIC
SBS	Chr11	135060	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	7953702	A-G	HET	INTERGENIC
SBS	Chr12	17632322	C-T	HET	UTR_5_PRIME
SBS	Chr12	18211330	C-A	HET	INTERGENIC
SBS	Chr12	4962219	G-A	HOMO	INTERGENIC
SBS	Chr2	30482513	C-T	HET	STOP_GAINED	LOC_Os02g49890
SBS	Chr3	1032022	C-G	HOMO	INTERGENIC
SBS	Chr3	10468940	T-A	HOMO	INTRON
SBS	Chr3	10482860	G-C	HOMO	INTERGENIC
SBS	Chr3	12000961	C-T	HOMO	INTERGENIC
SBS	Chr3	24225666	G-A	HOMO	INTERGENIC
SBS	Chr3	24227050	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43440
SBS	Chr3	24227052	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g43440
SBS	Chr4	11559579	T-G	HOMO	INTERGENIC
SBS	Chr4	11559580	C-A	HOMO	INTERGENIC
SBS	Chr4	26071730	C-T	HET	INTERGENIC
SBS	Chr5	12638106	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr5	24886528	G-A	HET	INTERGENIC
SBS	Chr5	4215523	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g07820
SBS	Chr5	4215524	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	1776344	T-A	HET	INTERGENIC
SBS	Chr7	11732325	A-T	HET	INTERGENIC
SBS	Chr7	17997641	G-A	HET	INTERGENIC
SBS	Chr7	2582620	T-G	HET	INTERGENIC
SBS	Chr8	15269822	T-C	HET	INTERGENIC
SBS	Chr8	18076460	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g29490
SBS	Chr8	3117407	C-T	HET	INTERGENIC
SBS	Chr9	6692244	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	351271	351274	3
Deletion	Chr8	791846	791874	28
Deletion	Chr8	3696001	3720000	24000	6
Deletion	Chr1	7805174	7805179	5	LOC_Os01g13930
Deletion	Chr5	11896296	11896298	2
Deletion	Chr7	13569851	13569863	12
Deletion	Chr6	13686909	13687091	182
Deletion	Chr2	13923312	13923324	12
Deletion	Chr11	14052882	14052888	6
Deletion	Chr8	14054604	14054613	9
Deletion	Chr12	14201184	14201187	3	LOC_Os12g24750
Deletion	Chr11	15959794	15959803	9
Deletion	Chr9	18096245	18096269	24
Deletion	Chr12	19863839	19863845	6
Deletion	Chr10	20277028	20277029	1
Deletion	Chr9	22154905	22161200	6295	3
Deletion	Chr3	22161002	22161003	1
Deletion	Chr11	22940418	22940432	14
Deletion	Chr11	26269423	26269429	6
Deletion	Chr6	26846877	26846878	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21857128	21857131	4
Insertion	Chr2	16479231	16479242	12
Insertion	Chr3	25480101	25480102	2
Insertion	Chr4	17575546	17575571	26
Insertion	Chr5	11628116	11628116	1
Insertion	Chr6	21502727	21502728	2
Insertion	Chr7	29629256	29629257	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14487719	14742250	2
Inversion	Chr10	15664560	16475540	LOC_Os10g30150
Inversion	Chr10	15664832	16475547
Inversion	Chr12	22217325	23444658	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	4616138	Chr1	26625434
Translocation	Chr10	18609744	Chr2	529719	LOC_Os10g34880
Translocation	Chr12	24377801	Chr10	18610191	LOC_Os10g34880
Translocation	Chr12	24378139	Chr2	529715
Translocation	Chr12	25030382	Chr6	13687087	LOC_Os12g40450
Translocation	Chr12	25030383	Chr6	13686910	LOC_Os12g40450

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