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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14549903	G-A	HET	INTERGENIC
SBS	Chr1	19324357	C-T	HET	INTERGENIC
SBS	Chr1	3055733	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g06490
SBS	Chr1	38092890	C-T	HET	INTRON
SBS	Chr1	38092891	C-T	HET	INTRON
SBS	Chr1	40041449	C-G	HET	INTERGENIC
SBS	Chr10	9463928	G-T	HET	INTRON
SBS	Chr10	9463930	G-C	HET	INTRON
SBS	Chr11	20632093	C-T	HET	INTERGENIC
SBS	Chr11	3967892	T-C	HOMO	INTERGENIC
SBS	Chr11	8270852	T-G	HOMO	INTERGENIC
SBS	Chr12	12470137	T-C	HET	INTERGENIC
SBS	Chr12	2036450	A-T	HET	INTERGENIC
SBS	Chr2	1792468	G-A	HET	UTR_3_PRIME
SBS	Chr2	32359820	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	22588701	C-T	HOMO	INTERGENIC
SBS	Chr3	23619771	A-T	HET	INTRON
SBS	Chr3	253347	G-A	HET	INTERGENIC
SBS	Chr3	25849986	C-G	HET	INTERGENIC
SBS	Chr4	21537121	G-A	HET	INTERGENIC
SBS	Chr4	24958089	G-A	HOMO	INTERGENIC
SBS	Chr4	26793711	G-A	HET	INTERGENIC
SBS	Chr4	33181647	A-G	HET	INTERGENIC
SBS	Chr5	26369328	A-T	HET	INTERGENIC
SBS	Chr5	26992606	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	29364868	T-A	HET	INTERGENIC
SBS	Chr5	5490529	G-A	HET	INTERGENIC
SBS	Chr5	9196707	A-G	HET	INTERGENIC
SBS	Chr6	22874490	C-T	HOMO	INTERGENIC
SBS	Chr6	8091323	G-A	HET	INTERGENIC
SBS	Chr7	11408494	T-C	HET	INTRON
SBS	Chr7	16698171	C-A	HET	INTERGENIC
SBS	Chr7	18940986	C-A	HET	INTRON
SBS	Chr7	26681219	G-A	HET	INTERGENIC
SBS	Chr7	8633632	G-A	HET	STOP_GAINED	LOC_Os07g15070
SBS	Chr8	5946526	T-C	HET	INTRON
SBS	Chr9	11654060	G-A	HET	INTERGENIC
SBS	Chr9	5822921	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	6689022	C-T	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	507396	507416	20	LOC_Os03g01830
Deletion	Chr9	1287656	1287657	1
Deletion	Chr12	3903001	3919000	16000	2
Deletion	Chr6	4696035	4696036	1
Deletion	Chr9	5472525	5472530	5	LOC_Os09g10054
Deletion	Chr8	6262110	6262111	1
Deletion	Chr9	7170474	7170477	3
Deletion	Chr7	9846137	9846147	10
Deletion	Chr6	10095343	10095349	6
Deletion	Chr4	10581996	10581999	3
Deletion	Chr5	13281083	13281087	4
Deletion	Chr11	14693778	14693806	28
Deletion	Chr2	15968347	15968363	16
Deletion	Chr8	16629245	16629253	8
Deletion	Chr5	18192623	18192647	24
Deletion	Chr8	18716662	18716674	12
Deletion	Chr10	19927905	19927932	27
Deletion	Chr2	21527141	21527153	12
Deletion	Chr11	23139399	23139423	24
Deletion	Chr5	29364579	29364585	6	LOC_Os05g51190
Deletion	Chr3	32979463	32979468	5
Deletion	Chr4	34596457	34596552	95	LOC_Os04g58080

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22994407	22994409	3
Insertion	Chr11	4878367	4878368	2
Insertion	Chr12	19503149	19503150	2
Insertion	Chr12	27134457	27134460	4
Insertion	Chr2	18453732	18453739	8
Insertion	Chr2	18552323	18552324	2
Insertion	Chr4	17356573	17356574	2
Insertion	Chr4	4124944	4125002	59	LOC_Os04g07760
Insertion	Chr6	10369851	10369852	2
Insertion	Chr7	11042053	11042055	3	LOC_Os07g18690
Insertion	Chr7	11351622	11351624	3
Insertion	Chr7	1455532	1455543	12

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3893068	3919054	LOC_Os12g07770
Inversion	Chr10	15983119	15983433
Inversion	Chr1	33332004	33332242

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	4156867	Chr2	17035193	LOC_Os04g07770
Translocation	Chr12	8885804	Chr10	10726305
Translocation	Chr10	10944016	Chr2	17035207	LOC_Os10g21380

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