Search Nipponbare

Mutant Information

Mutant Name	FN1023-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1023-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12099515	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g21600
SBS	Chr1	26677232	G-A	HET	INTERGENIC
SBS	Chr10	12962927	G-T	HET	INTRON
SBS	Chr10	5198148	G-T	HET	INTERGENIC
SBS	Chr10	9677356	A-T	HET	INTERGENIC
SBS	Chr12	15948628	A-G	HET	INTERGENIC
SBS	Chr2	2360753	C-T	HET	INTERGENIC
SBS	Chr2	33935089	C-G	HET	INTRON
SBS	Chr2	4494558	A-G	HET	INTERGENIC
SBS	Chr3	13435492	T-A	HET	INTERGENIC
SBS	Chr3	18174366	G-A	HET	INTERGENIC
SBS	Chr3	28275953	T-A	HET	INTERGENIC
SBS	Chr3	28955769	G-A	HET	INTERGENIC
SBS	Chr3	31765115	G-A	HET	UTR_3_PRIME
SBS	Chr3	34602496	C-T	HET	INTERGENIC
SBS	Chr3	35221860	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g62180
SBS	Chr3	35845418	A-G	HET	INTERGENIC
SBS	Chr3	3713369	C-T	HET	INTERGENIC
SBS	Chr3	4644874	C-A	HET	INTERGENIC
SBS	Chr3	7546916	C-T	HET	INTERGENIC
SBS	Chr4	12331569	C-T	HET	INTERGENIC
SBS	Chr4	16253507	C-T	HET	INTERGENIC
SBS	Chr4	18271851	G-C	HET	INTERGENIC
SBS	Chr4	18408702	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g30790
SBS	Chr4	23533278	G-T	HET	INTERGENIC
SBS	Chr4	27856888	G-A	HOMO	INTERGENIC
SBS	Chr4	8295090	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	20958283	G-T	HET	INTERGENIC
SBS	Chr5	22057412	C-T	HET	INTERGENIC
SBS	Chr5	22057414	C-T	HET	INTERGENIC
SBS	Chr5	26236862	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45200
SBS	Chr6	15955793	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g28090
SBS	Chr6	19985231	G-A	HOMO	INTERGENIC
SBS	Chr6	24628735	A-T	HET	INTERGENIC
SBS	Chr7	16030255	C-G	HOMO	INTRON
SBS	Chr7	17879245	A-G	HET	INTRON
SBS	Chr7	19467196	T-A	HET	INTRON
SBS	Chr7	606045	C-T	HOMO	INTRON
SBS	Chr8	19829071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g31970
SBS	Chr9	13128946	A-T	HET	INTRON
SBS	Chr9	18221455	C-T	HOMO	INTERGENIC
SBS	Chr9	22825276	G-A	HET	INTERGENIC
SBS	Chr9	2698012	T-C	HOMO	INTRON
SBS	Chr9	2698039	T-C	HOMO	INTRON
SBS	Chr9	2749621	T-G	HOMO	INTRON

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	651528	651530	2
Deletion	Chr12	987001	1052000	65000	10
Deletion	Chr12	1147542	1147550	8	LOC_Os12g03050
Deletion	Chr10	1228571	1228576	5
Deletion	Chr5	1877749	1877765	16
Deletion	Chr3	3120961	3120966	5
Deletion	Chr6	3257078	3257079	1
Deletion	Chr1	3652217	3652218	1
Deletion	Chr11	3687207	3687209	2	LOC_Os11g07320
Deletion	Chr1	4193891	4193895	4
Deletion	Chr1	4617004	4617005	1
Deletion	Chr12	4792281	4792286	5
Deletion	Chr9	6565284	6565286	2
Deletion	Chr2	7113945	7113973	28
Deletion	Chr12	7968651	7968652	1
Deletion	Chr6	8188987	8188997	10
Deletion	Chr5	8327217	8327220	3	LOC_Os05g14610
Deletion	Chr11	9417129	9417147	18
Deletion	Chr7	11414496	11414502	6
Deletion	Chr1	13616219	13616220	1
Deletion	Chr4	14540614	14540616	2
Deletion	Chr7	14787203	14787211	8
Deletion	Chr7	14856528	14856532	4
Deletion	Chr6	16137376	16137384	8
Deletion	Chr5	16169750	16169789	39
Deletion	Chr6	16424917	16424968	51
Deletion	Chr12	18353110	18353151	41
Deletion	Chr2	18357099	18357108	9
Deletion	Chr3	19184392	19184399	7
Deletion	Chr4	19881012	19881162	150
Deletion	Chr5	20211942	20211969	27
Deletion	Chr6	21962018	21962019	1
Deletion	Chr11	22129390	22129397	7
Deletion	Chr5	22647336	22647339	3
Deletion	Chr2	24037237	24037244	7	LOC_Os02g39780
Deletion	Chr11	27216007	27216008	1
Deletion	Chr7	28786716	28786720	4	LOC_Os07g48200
Deletion	Chr7	29555001	29675000	120000	19
Deletion	Chr1	30809695	30809696	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	26696880	26696880	1
Insertion	Chr1	36265361	36265361	1
Insertion	Chr3	10035752	10035752	1
Insertion	Chr6	15955787	15955787	1	LOC_Os06g28090
Insertion	Chr7	6369316	6369317	2

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1052258	Chr2	5651221
Translocation	Chr12	1052578	Chr2	5651220
Translocation	Chr12	3822482	Chr2	32185474	LOC_Os02g52610
Translocation	Chr12	3822927	Chr2	32191558	2
Translocation	Chr11	6162930	Chr7	21214548	LOC_Os11g11140
Translocation	Chr11	6173709	Chr7	21214557	LOC_Os11g11160
Translocation	Chr12	24504386	Chr1	13149511	2

Main menu

You are here

Search Nipponbare