Search Results
Mutant Information |
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Mutant Name | FN1023-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1023-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 45
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 12099515 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g21600 |
SBS | Chr1 | 26677232 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 2360753 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 4494558 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 33935089 | C-G | HET | INTRON | |
SBS | Chr3 | 3713369 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 4644874 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 7546916 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 13435492 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 18174366 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 28275953 | T-A | HET | INTERGENIC | |
SBS | Chr3 | 28955769 | G-A | HET | INTERGENIC | |
SBS | Chr3 | 31765115 | G-A | HET | UTR_3_PRIME | |
SBS | Chr3 | 34602496 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 35221860 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g62180 |
SBS | Chr3 | 35845418 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 8295090 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 12331569 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 16253507 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 18271851 | G-C | HET | INTERGENIC | |
SBS | Chr4 | 18408702 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g30790 |
SBS | Chr4 | 23533278 | G-T | HET | INTERGENIC | |
SBS | Chr4 | 27856888 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 20958283 | G-T | HET | INTERGENIC | |
SBS | Chr5 | 22057412 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 22057414 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 26236862 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g45200 |
SBS | Chr6 | 15955793 | A-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g28090 |
SBS | Chr6 | 19985231 | G-A | HOMO | INTERGENIC | |
SBS | Chr6 | 24628735 | A-T | HET | INTERGENIC | |
SBS | Chr7 | 606045 | C-T | HOMO | INTRON | |
SBS | Chr7 | 16030255 | C-G | HOMO | INTRON | |
SBS | Chr7 | 17879245 | A-G | HET | INTRON | |
SBS | Chr7 | 19467196 | T-A | HET | INTRON | |
SBS | Chr8 | 19829071 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g31970 |
SBS | Chr9 | 2698012 | T-C | HOMO | INTRON | |
SBS | Chr9 | 2698039 | T-C | HOMO | INTRON | |
SBS | Chr9 | 2749621 | T-G | HOMO | INTRON | |
SBS | Chr9 | 13128946 | A-T | HET | INTRON | |
SBS | Chr9 | 18221455 | C-T | HOMO | INTERGENIC | |
SBS | Chr9 | 22825276 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 5198148 | G-T | HET | INTERGENIC | |
SBS | Chr10 | 9677356 | A-T | HET | INTERGENIC | |
SBS | Chr10 | 12962927 | G-T | HET | INTRON | |
SBS | Chr12 | 15948628 | A-G | HET | INTERGENIC |
Deletions: 39
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 651528 | 651530 | 2 | |
Deletion | Chr12 | 987001 | 1052000 | 65000 | 10 |
Deletion | Chr12 | 1147542 | 1147550 | 8 | LOC_Os12g03050 |
Deletion | Chr10 | 1228571 | 1228576 | 5 | |
Deletion | Chr5 | 1877749 | 1877765 | 16 | |
Deletion | Chr3 | 3120961 | 3120966 | 5 | |
Deletion | Chr6 | 3257078 | 3257079 | 1 | |
Deletion | Chr1 | 3652217 | 3652218 | 1 | |
Deletion | Chr11 | 3687207 | 3687209 | 2 | LOC_Os11g07320 |
Deletion | Chr1 | 4193891 | 4193895 | 4 | |
Deletion | Chr1 | 4617004 | 4617005 | 1 | |
Deletion | Chr12 | 4792281 | 4792286 | 5 | |
Deletion | Chr9 | 6565284 | 6565286 | 2 | |
Deletion | Chr2 | 7113945 | 7113973 | 28 | |
Deletion | Chr12 | 7968651 | 7968652 | 1 | |
Deletion | Chr6 | 8188987 | 8188997 | 10 | |
Deletion | Chr5 | 8327217 | 8327220 | 3 | LOC_Os05g14610 |
Deletion | Chr11 | 9417129 | 9417147 | 18 | |
Deletion | Chr7 | 11414496 | 11414502 | 6 | |
Deletion | Chr1 | 13616219 | 13616220 | 1 | |
Deletion | Chr4 | 14540614 | 14540616 | 2 | |
Deletion | Chr7 | 14787203 | 14787211 | 8 | |
Deletion | Chr7 | 14856528 | 14856532 | 4 | |
Deletion | Chr6 | 16137376 | 16137384 | 8 | |
Deletion | Chr5 | 16169750 | 16169789 | 39 | |
Deletion | Chr6 | 16424917 | 16424968 | 51 | |
Deletion | Chr12 | 18353110 | 18353151 | 41 | |
Deletion | Chr2 | 18357099 | 18357108 | 9 | |
Deletion | Chr3 | 19184392 | 19184399 | 7 | |
Deletion | Chr4 | 19881012 | 19881162 | 150 | |
Deletion | Chr5 | 20211942 | 20211969 | 27 | |
Deletion | Chr6 | 21962018 | 21962019 | 1 | |
Deletion | Chr11 | 22129390 | 22129397 | 7 | |
Deletion | Chr5 | 22647336 | 22647339 | 3 | |
Deletion | Chr2 | 24037237 | 24037244 | 7 | LOC_Os02g39780 |
Deletion | Chr11 | 27216007 | 27216008 | 1 | |
Deletion | Chr7 | 28786716 | 28786720 | 4 | LOC_Os07g48200 |
Deletion | Chr7 | 29555001 | 29675000 | 120000 | 19 |
Deletion | Chr1 | 30809695 | 30809696 | 1 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 15955787 | 15955787 | 1 | LOC_Os06g28090 |
Insertion | Chr7 | 6369316 | 6369317 | 2 | |
Insertion | Chr1 | 26696880 | 26696880 | 1 | |
Insertion | Chr1 | 36265361 | 36265361 | 1 | |
Insertion | Chr3 | 10035752 | 10035752 | 1 |
No Inversion
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 1052258 | Chr2 | 5651221 | |
Translocation | Chr12 | 1052578 | Chr2 | 5651220 | |
Translocation | Chr12 | 3822482 | Chr2 | 32185474 | LOC_Os02g52610 |
Translocation | Chr12 | 3822927 | Chr2 | 32191558 | 2 |
Translocation | Chr11 | 6162930 | Chr7 | 21214548 | LOC_Os11g11140 |
Translocation | Chr11 | 6173709 | Chr7 | 21214557 | LOC_Os11g11160 |
Translocation | Chr12 | 24504386 | Chr1 | 13149511 | 2 |