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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18841235	C-G	HOMO	INTERGENIC
SBS	Chr1	25745258	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g45350
SBS	Chr1	38913014	A-T	HET	INTRON
SBS	Chr1	41357271	G-A	HET	INTERGENIC
SBS	Chr2	6193169	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g11940
SBS	Chr3	3301988	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	28604399	A-G	HET	INTERGENIC
SBS	Chr4	2905731	C-T	HET	INTERGENIC
SBS	Chr4	3858854	A-G	HOMO	INTERGENIC
SBS	Chr4	3888174	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	10770907	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19360
SBS	Chr4	11617406	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g20720
SBS	Chr4	17166679	G-T	HOMO	INTERGENIC
SBS	Chr5	962028	T-A	HOMO	INTERGENIC
SBS	Chr5	13858652	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g24040
SBS	Chr5	16589351	C-T	HET	INTERGENIC
SBS	Chr6	1794283	C-T	HET	INTERGENIC
SBS	Chr6	2893394	T-G	HOMO	INTERGENIC
SBS	Chr6	8379793	A-G	HET	INTERGENIC
SBS	Chr6	13136044	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22580
SBS	Chr6	26068604	T-C	HET	INTERGENIC
SBS	Chr7	4493160	C-T	HET	INTRON
SBS	Chr7	14609487	C-G	HET	SPLICE_SITE_REGION
SBS	Chr7	15415274	G-T	HOMO	INTERGENIC
SBS	Chr7	19040494	C-A	HET	INTERGENIC
SBS	Chr7	20475624	G-T	HET	INTERGENIC
SBS	Chr7	20526831	T-C	HET	INTERGENIC
SBS	Chr7	21717856	C-T	HET	INTERGENIC
SBS	Chr7	23754331	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	17501122	G-C	HET	INTRON
SBS	Chr9	7414165	A-G	HET	INTERGENIC
SBS	Chr10	9357788	G-A	HET	INTERGENIC
SBS	Chr10	9646777	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g18940
SBS	Chr10	16882862	C-T	HET	INTERGENIC
SBS	Chr10	19289658	C-A	HET	INTERGENIC
SBS	Chr10	20008930	G-C	HOMO	INTERGENIC
SBS	Chr11	22313586	A-T	HET	INTRON
SBS	Chr12	16929318	C-T	HET	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	876258	891762	15504	4
Deletion	Chr8	2515581	2515585	4
Deletion	Chr8	5735137	5735155	18
Deletion	Chr10	10694251	10694252	1
Deletion	Chr4	12099603	12099614	11	LOC_Os04g21410
Deletion	Chr1	15365847	15365848	1
Deletion	Chr4	16307777	16307780	3	LOC_Os04g27560
Deletion	Chr9	20278093	20278094	1
Deletion	Chr10	21772488	21772493	5
Deletion	Chr7	21862251	21862267	16
Deletion	Chr11	22030680	22030685	5
Deletion	Chr11	22230299	22230310	11	LOC_Os11g37660
Deletion	Chr6	22264959	22264969	10
Deletion	Chr3	25645764	25645766	2
Deletion	Chr5	26032336	26032342	6
Deletion	Chr7	29459800	29459806	6
Deletion	Chr6	30887461	30887464	3	LOC_Os06g51050
Deletion	Chr1	42927484	42927491	7

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	15780243	15780244	2
Insertion	Chr12	17485054	17485057	4
Insertion	Chr11	2668172	2668172	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	22968759	23384248
Inversion	Chr11	26260533	26388438	LOC_Os11g43500

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	4332324	Chr6	28894549
Translocation	Chr7	15550444	Chr5	5643382
Translocation	Chr12	25690618	Chr8	3319826	LOC_Os12g41460
Translocation	Chr12	25692752	Chr8	3319821	LOC_Os12g41470
Translocation	Chr11	26388465	Chr1	42764858

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