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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6253233	C-A	HOMO	UTR_3_PRIME
SBS	Chr1	6253234	T-A	HOMO	UTR_3_PRIME
SBS	Chr1	29056360	C-T	HET	INTERGENIC
SBS	Chr2	3602300	G-A	HET	INTERGENIC
SBS	Chr2	8636717	G-C	HET	INTERGENIC
SBS	Chr2	35149462	A-G	HET	INTERGENIC
SBS	Chr3	8902766	C-T	HOMO	UTR_3_PRIME
SBS	Chr3	20562534	C-A	HET	INTERGENIC
SBS	Chr3	23528387	G-C	HET	INTERGENIC
SBS	Chr3	34939912	T-C	HOMO	INTRON
SBS	Chr4	6330044	G-A	HOMO	INTERGENIC
SBS	Chr4	7690905	T-A	HET	INTERGENIC
SBS	Chr4	13247710	T-A	HOMO	INTERGENIC
SBS	Chr4	18753468	G-A	HOMO	INTERGENIC
SBS	Chr4	27102795	T-A	HOMO	INTERGENIC
SBS	Chr5	6342472	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	11523028	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19750
SBS	Chr5	11523029	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19750
SBS	Chr5	17227409	A-T	HET	INTERGENIC
SBS	Chr5	17876066	A-G	HOMO	INTERGENIC
SBS	Chr5	25488172	A-T	HOMO	INTERGENIC
SBS	Chr5	27187636	C-T	HET	INTRON
SBS	Chr6	11189841	C-G	HET	INTERGENIC
SBS	Chr7	8727107	C-A	HET	INTERGENIC
SBS	Chr7	16052374	C-T	HET	INTERGENIC
SBS	Chr7	24954636	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g41630
SBS	Chr7	28320185	G-A	HET	INTERGENIC
SBS	Chr8	17671464	G-A	HET	INTERGENIC
SBS	Chr9	13838596	G-A	HET	INTRON
SBS	Chr9	15950448	C-G	HET	INTERGENIC
SBS	Chr9	17071614	T-C	HOMO	INTERGENIC
SBS	Chr10	13397231	C-A	HOMO	INTRON
SBS	Chr11	5880468	G-T	HOMO	INTRON
SBS	Chr11	5880469	C-T	HOMO	INTRON
SBS	Chr11	18792327	G-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	553769	553775	6
Deletion	Chr11	1159001	1357000	198000	30
Deletion	Chr2	3796758	3796770	12	LOC_Os02g07350
Deletion	Chr3	4592313	4592322	9
Deletion	Chr1	4717554	4717570	16
Deletion	Chr4	5538001	5574000	36000	8
Deletion	Chr2	7490201	7490202	1
Deletion	Chr12	8008909	8008924	15
Deletion	Chr12	8814885	8814899	14
Deletion	Chr1	10465315	10465316	1
Deletion	Chr9	11992159	11992162	3	LOC_Os09g20020
Deletion	Chr10	13424086	13424089	3
Deletion	Chr3	16691196	16691216	20
Deletion	Chr3	16787359	16787361	2	LOC_Os03g29460
Deletion	Chr2	16798688	16798698	10
Deletion	Chr1	17823668	17823678	10	LOC_Os01g32500
Deletion	Chr2	18023904	18024048	144
Deletion	Chr3	19599574	19599586	12
Deletion	Chr2	20362083	20362091	8
Deletion	Chr8	20766241	20766245	4
Deletion	Chr8	22205703	22205704	1
Deletion	Chr7	22335438	22335470	32
Deletion	Chr2	23238307	23238327	20
Deletion	Chr6	23376001	23564000	188000	28
Deletion	Chr5	23866672	23866687	15
Deletion	Chr5	25488179	25488180	1
Deletion	Chr4	27873128	27873133	5	LOC_Os04g47030
Deletion	Chr11	28662360	28662365	5
Deletion	Chr2	35402901	35402907	6	LOC_Os02g57800
Deletion	Chr2	35408957	35408979	22

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	12473264	12473264	1
Insertion	Chr2	18910158	18910175	18
Insertion	Chr4	23881492	23881495	4
Insertion	Chr1	33348704	33348706	3
Insertion	Chr1	2223380	2223381	2
Insertion	Chr1	24439210	24439210	1
Insertion	Chr3	28062372	28062372	1
Insertion	Chr9	3415664	3415664	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1158337	Chr3	3665909	LOC_Os03g07160
Translocation	Chr11	1158976	Chr3	3665901	2
Translocation	Chr4	2172575	Chr1	27404759	LOC_Os04g04540
Translocation	Chr3	17986429	Chr2	18023915	LOC_Os03g31550
Translocation	Chr11	21302769	Chr1	25564588	LOC_Os01g45040
Translocation	Chr8	23485349	Chr6	23717186

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